View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_29 (Length: 373)
Name: NF18173_low_29
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 180 - 358
Target Start/End: Complemental strand, 2836654 - 2836472
Alignment:
| Q |
180 |
tttaaaaatgaaaaggccacaatttcacacaagaatccctcaagataccgaacccccattttaagtcttttagcaatgaat----tctacaattacaaag |
275 |
Q |
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| T |
2836654 |
tttaaaaatgaaaaggccacaatttcacacaagaatccctcaagataccgaatccccattttaagtcttttagcaatgaatgaattctacaattacaaag |
2836555 |
T |
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| Q |
276 |
tatttgagctcagattttgtgtagacgaatcaccttttgatctatgaaactgttcaatcatatggacgaaaatagttgcttac |
358 |
Q |
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| T |
2836554 |
tatttgagctcagattttgtgtagacgaatcaccttttgatctatgaaactgttcaatcatatggacgaaaatagttgcttac |
2836472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 2836908 - 2836741
Alignment:
| Q |
17 |
agagaaaaacgaaaactgagaaaaataaacaatactagtactcatgaaaagtgaaaacagaggagagagataaggatttggaagaaaaaggtaacaaaaa |
116 |
Q |
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| T |
2836908 |
agagaaaaacgaaaactgagaaaaataaacaatactagtactcatgaaaagtgaaaacagaggagagagataaggatttggaagaaaaaggtaacaaaaa |
2836809 |
T |
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| Q |
117 |
ttgaacaaatatccgatgattcttgcacatcaggagagaatgagttcttttatgtgaaattcttttaa |
184 |
Q |
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| T |
2836808 |
ttgaacatatatccgatgattcttgcacatcaagagagaatgagttcttttaagtgaaattcttttaa |
2836741 |
T |
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