View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_3 (Length: 763)
Name: NF18173_low_3
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 9 - 559
Target Start/End: Complemental strand, 50614824 - 50614274
Alignment:
| Q |
9 |
agagatggaggggaaacaaaataacagtcaagaaattgatcaagaaaccgattatgaagaacaagtttctagtagttattcttgttcatatttaattttc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50614824 |
agagatggaggggaaacaaaataacagtcaagaaattgatcaagaaaccgattatgaagaacaagtttctagtagttattcttgttcatatttaattttc |
50614725 |
T |
|
| Q |
109 |
atctttttcagttttatgaagtattgtgatcgggtcgcgatcctaaacgaggaatttgtgttatgaaatttcattgtttttcacttgaaaatttggtatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50614724 |
atctttttcagttttatgaagtattgtgatcgggtcgcgatcctaaacgaagaatttgtgttatgaagtttcattgtttttcacttgaaaatttggtatt |
50614625 |
T |
|
| Q |
209 |
agttgtgacgattgcgccaaggagattaaagaatacnnnnnnngaggggttctatcaccaaaaagagagttatatcaaattgattagtgccgttaattga |
308 |
Q |
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| T |
50614624 |
agttgtgatgtttgcgcgaaggagattaaagaatacaaaaaaagaggggttctatcaccaaaaagagagttatatcaaattgattagtgccgttaattga |
50614525 |
T |
|
| Q |
309 |
taaaataaacgttatcgttacaagtcatggagtggacgatgacgtccgtatgcagtctttgccagtgaggaaacatgacaatgaagcagaaaattcaggt |
408 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50614524 |
taaaatcaacgttatcgttacaagtcatggagtggacgatgacgtccgtatgcagtctttgccagtgaggaaacatgacaatgaagcagaaaattcaggt |
50614425 |
T |
|
| Q |
409 |
tttccccattacataaggttaatggaaattttgagtgaagttgataatgttaatgaatatcaaaatattggtgatggtcatagcattgagaagacattaa |
508 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50614424 |
ttttcccattacataaggttaatggaaattctgagtgaagttcataatgttaatgaatatcaaaatattggtgatggtcatagcattgagaagacattaa |
50614325 |
T |
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| Q |
509 |
agctaaagcttagcatatcaaacaatcaacttgcagagatcgtgaaaaaac |
559 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
50614324 |
agctaaagcttagcatatcaaacaatcaacttgcagacatcatgaaaaaac |
50614274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 682 - 749
Target Start/End: Complemental strand, 50614188 - 50614122
Alignment:
| Q |
682 |
gttgaggaatgaagagtacttgaataaaaatcagttggtcaaactcattgtttgcaaaggtgtaagtg |
749 |
Q |
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| T |
50614188 |
gttgaggaatgaagagtacttcaataaaa-tcagttggtcaaactcattgtttgcaaaggtgtaagtg |
50614122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 653
Target Start/End: Complemental strand, 50614227 - 50614186
Alignment:
| Q |
612 |
aacattctaaagtttcaaaaataaggattggagcaaactgtt |
653 |
Q |
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| T |
50614227 |
aacattctaaagtttcaaaaataaggattggagcaaactgtt |
50614186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 54016302 - 54016493
Alignment:
| Q |
9 |
agagatggaggggaaacaaaat-aacagtcaagaaattgatcaagaaaccgattatgaagaacaagtttctagtagttattcttgttcatatttaatttt |
107 |
Q |
| |
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|||||||||||||||||||||| ||| ||| ||||| || |||||| ||||||||| || ||| ||| | |||||||| ||||||||||||||| |
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| T |
54016302 |
agagatggaggggaaacaaaatgaac---caataaattaattcagaaacagattatgaacaataaggttccaaagtttattcttcttcatatttaatttt |
54016398 |
T |
|
| Q |
108 |
ca-tctttttcagttttatgaagtattgtgatcgggtcgcgatcctaaacgaggaatttgtgttatgaaatttcattgtttttcacttgaaaatt |
201 |
Q |
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| | || |||| |||||||||| ||||||| | ||| |||| ||||||| ||||| ||||||||| |||| ||||| |||||||||||||| |
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| T |
54016399 |
aagtattgttcaattttatgaagaattgtgacggagtcacgatgttaaacgaagaattcatgttatgaagtttcgttgttgttcacttgaaaatt |
54016493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 13108501 - 13108284
Alignment:
| Q |
9 |
agagatggaggggaaacaaaataacagtcaagaaattgatcaagaaaccgattatgaagaacaagtttctagtagttattcttgttcatatttaattttc |
108 |
Q |
| |
|
|||||||||||||||| | ||| | | ||||| ||||| | ||||||||||||||||||||||| ||| | |||||||| ||||| ||||||||| |
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| T |
13108501 |
agagatggaggggaaatagaatgaaaatcaagcaattgttttagaaaccgattatgaagaacaaggttccaaattttattcttattcatgtttaatttta |
13108402 |
T |
|
| Q |
109 |
a-tctttttcagttttatgaagtattgtgatcgggtcgcgatcctaaacgaggaatttgtgttatgaaatttcattgtttttcacttgaaaatttggtat |
207 |
Q |
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| | |||||| || |||||| |||||||| ||||||| || ||||| || ||||| ||||| ||| |||| ||||| ||||||| |||| ||| | |
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| T |
13108401 |
agtatttttcgattccatgaagaattgtgatggggtcgcaatgctaaatgaagaattcatgttaagaagtttcgttgttactcacttgtgaattcggtct |
13108302 |
T |
|
| Q |
208 |
tagttgtgacgattgcgc |
225 |
Q |
| |
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| ||||||| | |||||| |
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| T |
13108301 |
tggttgtgatgtttgcgc |
13108284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 18801456 - 18801296
Alignment:
| Q |
36 |
tcaagaaattgatcaagaaaccgattatgaagaacaagtttctagtag-ttattcttgttcatatttaattttcatctttttcagttttatgaagtattg |
134 |
Q |
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|||||||||| ||||||||||||||| ||||||| ||| ||| | || ||||||||| ||||||||||||| | || ||| ||||||||||| ||| |
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| T |
18801456 |
tcaagaaatttatcaagaaaccgattgtgaagaataaggttc-cgaagtttattcttgctcatatttaatttcagtattattcggttttatgaaggtttg |
18801358 |
T |
|
| Q |
135 |
tgatcgggtcgcgatcctaaacgaggaatttgtgttatgaaatttcattgtttttcacttga |
196 |
Q |
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| T |
18801357 |
cattggggtcgcaatgttaaacgaagaattcatgttatgaagtttcgttgttaatcacttga |
18801296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 18841726 - 18841642
Alignment:
| Q |
9 |
agagatggaggggaaacaaaataacagtcaagaaattgatcaagaaaccgattatgaagaacaagtttctagtagttattcttgt |
93 |
Q |
| |
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||||||| || ||||||| ||| | ||| || ||| |||||||||||| ||||||||||| ||| |||| |||||||||||||| |
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| T |
18841726 |
agagatgaagaggaaacataatgaaagttaataaactgatcaagaaactgattatgaagagcaaatttcatgtagttattcttgt |
18841642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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