View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_31 (Length: 361)
Name: NF18173_low_31
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 1216712 - 1217056
Alignment:
| Q |
1 |
aaagtgggggtgttgttcctaaacccaaaaaatttattgacaccattaaagtgcaaggtacattagaattgttatctattatgtttgtttacgccacgcc |
100 |
Q |
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| T |
1216712 |
aaagtgggggtgttgttcctaaacccaaaaaatttattgacaccattaaagtgcaaggtacattagaattgttatctattatgtttgtttacgccacgcc |
1216811 |
T |
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| Q |
101 |
actgtaagattaggttacccaacttcgtatataagttttcctgaatcttttgagacgttcttcagtttgcagtacttgaagtcaaagtgggcctggaccc |
200 |
Q |
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| T |
1216812 |
actgtaagattaggttacccaacttcgtatataagttttcctgaatcttttgagacgttcttcactttgcagtacttgaagtcaaagtgggcctggacgc |
1216911 |
T |
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| Q |
201 |
tccaactggctgcaacatgttatctatgatgacgaatataattaaaacaaaatccttgcgatctgaagttttgcaaggtatgtgaaaatgcagtctgcat |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1216912 |
tccaactggctgcagcatgttatctatgatgacgaatataattaaaacaaaatccttgcaatctgaagttttgcaaggtatgtgaaaatgcagtctgcat |
1217011 |
T |
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| Q |
301 |
tataattaaaaggaattccatgtgatctcaagtcatgcaagattt |
345 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1217012 |
tataattaaaaggaattccatgtgatctcaagtcgtgcaagattt |
1217056 |
T |
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