View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_36 (Length: 335)
Name: NF18173_low_36
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 1815637 - 1815320
Alignment:
| Q |
1 |
atttggtggtttaaaccaccaaattagtcttgattttgtagcgtgctctcatccacaattaaaacagc--gtcaaccactaatcacttcttttnnnnnnn |
98 |
Q |
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| T |
1815637 |
atttggtggtttaaaccaccaaattagtcttgattttgtagcgtgctctcatccacaattaaaacagccagtcaaccactaatcacttcctttaaaaaaa |
1815538 |
T |
|
| Q |
99 |
ctatttatggaagaagnnnnnnntgcaacttacgggaccacttctcaaaaagaaaaaccctagttggaccacaaaaagcaccgattcaaaaatatagatg |
198 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1815537 |
ctatttatggaagaagaaaaaa-tgcaacttacgggaccacttctcaaaaagaaaaaccctagttggaccacaaaaagcaccgattcaaaaatatagatg |
1815439 |
T |
|
| Q |
199 |
aaaagaagtgcatatgtagttacatagatcacacatgtaggtgtgttagcaacgtgttttagatcgattttgaggtaagaagttatttaatccataataa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
1815438 |
aaaagaagtgcatatgtagttacatagatcacacatgtaggtgtgttagcaacgtgttttggatcgattttgaggtaagaagtcatttaatccataataa |
1815339 |
T |
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| Q |
299 |
aaattgcatatgattcaat |
317 |
Q |
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|||| |||||||||||||| |
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| T |
1815338 |
aaatcgcatatgattcaat |
1815320 |
T |
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