View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18173_low_37 (Length: 331)
Name: NF18173_low_37
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_37 |
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| [»] scaffold0455 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: scaffold0455 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 12081 - 11765
Alignment:
| Q |
15 |
cttttaaccaaaccacgaaaatttcattattggatgaagagacatccttgcttcttcatcccttttatataaaagtgcttgctttcaccttgagtctcag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12081 |
cttttaaccaaaccacgaaaatttcattattggatgaagagacatccttgcttcttcatccattttatataaaagtgcttgctttcaccttgagtctcag |
11982 |
T |
|
| Q |
115 |
attagcttccctctgtcactcgacatccttacatcgttgcttccatttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11981 |
attagcttccctctgtcactcgacatccttacatcgttgcttccatttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaa |
11882 |
T |
|
| Q |
215 |
tatgatgaagaacaatagatgattaaatgcttataacacatgcttacaatcctcaatattgtccaccccgtcccgaaacccggacatacatatgtatagg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11881 |
tatgatgaagaacaatagatgattaaatgcttataacacatgcttacaatcctcaatattgtccaccccgtcccgaaacccggacatacatatgtatagg |
11782 |
T |
|
| Q |
315 |
catgaacatataacacc |
331 |
Q |
| |
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||||||||||||||||| |
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| T |
11781 |
catgaacatataacacc |
11765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 28134045 - 28133729
Alignment:
| Q |
15 |
cttttaaccaaaccacgaaaatttcattattggatgaagagacatccttgcttcttcatcccttttatataaaagtgcttgctttcaccttgagtctcag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28134045 |
cttttaaccaaaccacgaaaatttcattattggatgaagagacatccttgcttcttcatccattttatataaaagtgcttgctttcaccttgagtctcag |
28133946 |
T |
|
| Q |
115 |
attagcttccctctgtcactcgacatccttacatcgttgcttccatttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28133945 |
attagcttccctctgtcactcgacatccttacatcgttgcttccatttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaa |
28133846 |
T |
|
| Q |
215 |
tatgatgaagaacaatagatgattaaatgcttataacacatgcttacaatcctcaatattgtccaccccgtcccgaaacccggacatacatatgtatagg |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28133845 |
tatgatgaagaacaatagatgattaaatgcttataacacatgcttacaatcctcaatattgtccaccccgtcccgaaacccggacatacatatgtatagg |
28133746 |
T |
|
| Q |
315 |
catgaacatataacacc |
331 |
Q |
| |
|
||||||||||||||||| |
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| T |
28133745 |
catgaacatataacacc |
28133729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 64 - 269
Target Start/End: Complemental strand, 28220968 - 28220759
Alignment:
| Q |
64 |
gcttcttcatcccttttatata--aaagtgcttgctttcaccttgagtctcagattagcttccctctgtcactcgaca--tccttacatcgttgcttcca |
159 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||| |||| |||| | ||||||||||||| |
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| T |
28220968 |
gcttcttcatcccttttatatataaaagtgtttgctttcaccttgattctcagattagcttcaatctgtcactagacacatcctgaaatcgttgcttcca |
28220869 |
T |
|
| Q |
160 |
tttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaatgcttataacacatgctt |
259 |
Q |
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|
|||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||||| |
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| T |
28220868 |
tttgcatcttcaaaatcttccttcaaactgtattgattgctcaaactctgctaaatatgatgaagaacaatggacgattaaatgcttataaaacatgctt |
28220769 |
T |
|
| Q |
260 |
acaatcctca |
269 |
Q |
| |
|
|||||||||| |
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| T |
28220768 |
acaatcctca |
28220759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 28219212 - 28219268
Alignment:
| Q |
270 |
atattgtccaccccgtcccgaaacccggacatacatatgtataggcatgaacatata |
326 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
28219212 |
atattgcccaccccactccgaaacccggacatacatctgtataggcatgaacatata |
28219268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 64 - 269
Target Start/End: Complemental strand, 21466 - 21257
Alignment:
| Q |
64 |
gcttcttcatcccttttatata--aaagtgcttgctttcaccttgagtctcagattagcttccctctgtcactcgaca--tccttacatcgttgcttcca |
159 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||| |||| |||| | ||||||||||||| |
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| T |
21466 |
gcttcttcatcccttttatatataaaagtgtttgctttcaccttgattctcagattagcttcaatctgtcactagacacatcctgaaatcgttgcttcca |
21367 |
T |
|
| Q |
160 |
tttgcatcttcaaaatcttccttcaaacactattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaatgcttataacacatgctt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||||| |
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| T |
21366 |
tttgcatcttcaaaatcttccttcaaactgtattgattgctcaaactctgctaaatatgatgaagaacaatggacgattaaatgcttataaaacatgctt |
21267 |
T |
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| Q |
260 |
acaatcctca |
269 |
Q |
| |
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|||||||||| |
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| T |
21266 |
acaatcctca |
21257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 19710 - 19766
Alignment:
| Q |
270 |
atattgtccaccccgtcccgaaacccggacatacatatgtataggcatgaacatata |
326 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
19710 |
atattgcccaccccactccgaaacccggacatacatctgtataggcatgaacatata |
19766 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 272
Target Start/End: Complemental strand, 9816270 - 9816077
Alignment:
| Q |
85 |
aaaagtgcttgctttcaccttgagtctcagattagcttccctctgtcactcgacatccttacatcgttgcttccatttgcatcttcaaaatcttccttca |
184 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | | | |||||||| | |||||| | || ||||||| ||||||||||||| ||||||||| || |
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| T |
9816270 |
aaaagtgtttgctttcaccttgagtctcagataaacagac-tctgtcaccataaatccttgcttctttgcttcgatttgcatcttcagaatcttcctcca |
9816172 |
T |
|
| Q |
185 |
aa--cactattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaatgctta-----taacacatgcttacaatcctcaata |
272 |
Q |
| |
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|| | |||||||| | ||||| ||| ||||| | |||| |||||| | | ||||||||| |||| ||||||| ||||||||||||||||| |
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| T |
9816171 |
aactccctattgaaagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaacacaggcttacaatcctcaata |
9816077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 20015122 - 20015246
Alignment:
| Q |
125 |
ctctgtcactcgacatccttacatcgttgcttccatttgcatcttcaaaatcttccttcaaacact--attgaaggctcaaactctactaaatatgatga |
222 |
Q |
| |
|
|||||||||| | ||||||||| || ||||| ||||||||||||||||||| ||| | ||||| || ||||| | ||||| ||| |||| | ||||| |
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| T |
20015122 |
ctctgtcactagtcatccttacttccttgctcccatttgcatcttcaaaatgttcttccaaactctcagttgaaagttcaaaatctgataaagaggatga |
20015221 |
T |
|
| Q |
223 |
agaacaatagatgattaaatgctta |
247 |
Q |
| |
|
|||||||| | ||| |||||||||| |
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|
| T |
20015222 |
agaacaatggttgactaaatgctta |
20015246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 246
Target Start/End: Original strand, 20007195 - 20007316
Alignment:
| Q |
127 |
ctgtcactcgacatccttacatcgttgcttccatttgcatcttcaaaatcttccttcaaacact--attgaaggctcaaactctactaaatatgatgaag |
224 |
Q |
| |
|
|||||||| ||||| ||| | || ||||| ||||||||||||||| ||||||| | |||| || |||||| | ||||| ||| ||||| | ||||||| |
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| T |
20007195 |
ctgtcactagacattcttgcttctttgctcccatttgcatcttcataatcttcttcaaaactctccattgaaagttcaaaatcttctaaagaggatgaag |
20007294 |
T |
|
| Q |
225 |
aacaatagatgattaaatgctt |
246 |
Q |
| |
|
|||||| | || |||||||||| |
|
|
| T |
20007295 |
aacaatggttggttaaatgctt |
20007316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 1718337 - 1718305
Alignment:
| Q |
157 |
ccatttgcatcttcaaaatcttccttcaaacac |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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|
| T |
1718337 |
ccatttgcatcttcaaaatcttcctccaaacac |
1718305 |
T |
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