View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_39 (Length: 318)
Name: NF18173_low_39
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 12000535 - 12000242
Alignment:
| Q |
10 |
tgtgtgttttcttttgggtttgagatttataatgtatgctattgttatatcgatcgagttgaaaatttggctaaaagcatcatataaatgtatgtttgtt |
109 |
Q |
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| T |
12000535 |
tgtgtgttttcttttgggtttgagatttataatgtatgctattgttatatcgatcgagttgaaaatttggctataagcgtcatataaatgtatgtttgtt |
12000436 |
T |
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| Q |
110 |
gtcttaataattgctgaactgaactagtatgaagcatattaccatacaccgataagaactcggcttcaaaatctttctatcagaattttgataacatttt |
209 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12000435 |
gtcttaatcattg---aactgaactagtatgaagcatattaccatatactgataagaactcggcttcaaaatctttctatcagaattttgataacatttt |
12000339 |
T |
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| Q |
210 |
agggtaaaaggagacggttagtatagacactaaacttgacactaaaaattgaaataagattcattaacagaacaaataaacttaagatctggaccta |
306 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12000338 |
agggtaaaaggagacggttagtttagacactaaacttgacactaaaaattgaaataagattcattaacagaacaaataaacttaagatctggaccta |
12000242 |
T |
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