View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_40 (Length: 315)
Name: NF18173_low_40
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 146 - 299
Target Start/End: Original strand, 1387154 - 1387307
Alignment:
| Q |
146 |
ccttccatttgcttgttttttcacaggttttacaattggcctaaatgaattttctgataaaaccatcgaagaattttgtgattgttcaaaagtaccacct |
245 |
Q |
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| T |
1387154 |
ccttccatttgcttgttttttcacaggttttacaattggcctaaatgaattttctgatagaaccatcgaagaattttgtgattgttcaaaagtaccacct |
1387253 |
T |
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| Q |
246 |
atggatgatttcctaataactttaaaacaatggaaagaaaaccatcgtcaaaac |
299 |
Q |
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| T |
1387254 |
atggatgatttcctaataactttaaaacaatggaaagaaaaccgtcgtcaaaac |
1387307 |
T |
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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1387005 - 1387088
Alignment:
| Q |
1 |
acgcaaagaaatattcaagatggagttggaactcatagagaagcataacagcactgcagcagg---taatattatacgcttaat |
81 |
Q |
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| T |
1387005 |
acgcaaagaaatattcaagatggagttggaactcatagagaagcataacagcactgcagcaggtaataatattatacgcttaat |
1387088 |
T |
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