View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_41 (Length: 310)
Name: NF18173_low_41
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 43539447 - 43539745
Alignment:
| Q |
1 |
cgtgttggtgtccaatatccttgtttgtgttcgtgctttataacccctagggtatcatcttttgtcaatccaaacaaaccaccaaagggagggattaaca |
100 |
Q |
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| T |
43539447 |
cgtgttggtgtccaatatccttgtttatgttcgtgctttatagcccctagggtatcatcttttgtcaatccaaacaaaccaccaaaggaagggattaaca |
43539546 |
T |
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| Q |
101 |
taaaactcaaaagtcttgttaggcctaatcaataatttattttaagataaaaggggacatattgtgaatgtaaactagttttacattgacgttcaataag |
200 |
Q |
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| T |
43539547 |
taaaactcaaaagtcttgttaggcctaatcaataatttattttaagataaaaggggatatattgtgaatgtaaactaattttacattga---tcaataag |
43539643 |
T |
|
| Q |
201 |
cgttgaatattaaacacttgaaaaaagcaattataataaaggcctacacgaaaaatatgatgagttcttaccttcataaaacaaaaatatgtatatgatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
43539644 |
agttgaatattaaacacttgaaaaaagcaattataataaaggcctacacg-aaaatatgatgagttcttaccttcatacaaaaaaaatatgtatatgatg |
43539742 |
T |
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