View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_42 (Length: 298)
Name: NF18173_low_42
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 12000756 - 12001029
Alignment:
| Q |
1 |
ttacacaattggtttggtggtgatcagttagagaggataacaaaagaaggaaaattttacaagatcgtgtgactgtgtatggcagacgaaaaagaagtag |
100 |
Q |
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| T |
12000756 |
ttacacaattggtttgatggtgatcagttacagaggataacaaaagaaggaaaattttacaagatcgtgtgactgtgtatggcagacgaaaaagaagtag |
12000855 |
T |
|
| Q |
101 |
tttcaaaattttagtgagcaagtcctattgtaagctgctaacataatttagctataaatatatttttacaagatattaataccatatnnnnnnnnntctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| |||| |
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| T |
12000856 |
tttcaaaattttagtgagcaagtcctattgtaagctgctaacacaatttagcta-------aattttacaagatattaataccatataaaaaaaaatctg |
12000948 |
T |
|
| Q |
201 |
agttttttgcagttccaaatcgtacaataattttgggttttgaattaatggctgagttttttacatactgcacgagcaaag |
281 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |
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| T |
12000949 |
agctttttgcagttccaaatcgtaaaataattttgggttttgaattattggctgagttttttacatactgcatgaggaaag |
12001029 |
T |
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