View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_47 (Length: 278)
Name: NF18173_low_47
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 7476745 - 7476991
Alignment:
| Q |
12 |
aagaagcatgggacattattccttcaccttaaatattttttattttnnnnnnnnggtatgcatgtttttattagaggacatgtaattgacacatcaacta |
111 |
Q |
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| T |
7476745 |
aagatgcatgggacattattccttcaccttaaatatttt--attttaaaaaaa-ggtatgcatgtttttattagaggacatgtaattgacacatcaacta |
7476841 |
T |
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| Q |
112 |
ataatgaatgcaagaattgccgcgttgccattaaagaattcaagaaataaaatatggtgtcgaataagatcaacacatgcatgttat-aaactctaatgg |
210 |
Q |
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| T |
7476842 |
ataatgaatgcaagaattgccgcgttgccattaaagaattcaagaaataaaatatggtgtcgaataagatcaacacatgcatgttataaaactctaatgg |
7476941 |
T |
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| Q |
211 |
cagcatataatattcccaaatgatcgtaacagtgatagagatgccaaagt |
260 |
Q |
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| T |
7476942 |
cagcatataatattcccaaatgatcgtaacagtgatagagatgccaaagt |
7476991 |
T |
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