View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_5 (Length: 729)
Name: NF18173_low_5
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 303
Target Start/End: Complemental strand, 33881683 - 33881393
Alignment:
| Q |
13 |
gcacagacaaataacattgttgaaataagcaaagatattggtaattaaactcttgttgaaatagcatgatctgatgctcattcatgctaacctgtcactg |
112 |
Q |
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| T |
33881683 |
gcacagacaaataacattgttgaaataatcaaagatattggtaattaaactcttgttgaaatagcatgatctgatgctcattcatgctaacctgtcactg |
33881584 |
T |
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| Q |
113 |
tcactgaaacctatttttccaatttggtctaatttgagtgtctaatttgagtgaccaaattgattctttaccaagacttcgatttgagttgagccattga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33881583 |
tcactgaaacctatttttccaatttggtctaatttgagtgtctaatttgagtgaccaaattgattctttaccaagacttcgatttgagttgagccgttga |
33881484 |
T |
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| Q |
213 |
caacttgaagcagacacaatcaacacaccggatannnnnnnnggcatatatagaatgatacatagtggctttagaatgaattatgaaataa |
303 |
Q |
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| T |
33881483 |
caacttgaagcagacacaatcaacacaccggattttttttttggcatatatagaatgatacatagtggctttagaatgacttatgaaataa |
33881393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 586 - 711
Target Start/End: Complemental strand, 33881074 - 33880951
Alignment:
| Q |
586 |
tactcttttaacaactggaaatgctgaaaataaggacaccaattacaactcataaagccaactcaaaacagatgaagattcagcaatcctaacacgccaa |
685 |
Q |
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| T |
33881074 |
tactcttttaacaactggaaatgctgaaaataaggacaccaattacaactcataaagccaactcaaaacagatgaagattcagcaatcctaacacgccaa |
33880975 |
T |
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| Q |
686 |
tccaagagagatactgagactaatct |
711 |
Q |
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| T |
33880974 |
tccaa--gagatactgagactaatct |
33880951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 291 - 394
Target Start/End: Complemental strand, 33881369 - 33881266
Alignment:
| Q |
291 |
aattatgaaataagaataatttcacataccttagtatccctgcaccttccaaccaactttataaacttcaattcagttaagtaaacatcattaaataaaa |
390 |
Q |
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| T |
33881369 |
aattatgaaataagaataatttcacataccttagtatccctgcaccttccaaccaactttataaacttcaattcagttaagtaaacatcattaaataaaa |
33881270 |
T |
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| Q |
391 |
ccaa |
394 |
Q |
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|||| |
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| T |
33881269 |
ccaa |
33881266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 448 - 533
Target Start/End: Complemental strand, 33881212 - 33881127
Alignment:
| Q |
448 |
attaaatagccatgcacaagaagtgcaggaaattacaccagnnnnnnncagtagctaacagtaagcgaaaagctacatagcagacc |
533 |
Q |
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| T |
33881212 |
attaaatagccatgcacaagaagtgcaggaaattacaccagaaaaaaacagtagctaacagtaagcgaaaagctacatagcagacc |
33881127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 43623214 - 43623297
Alignment:
| Q |
148 |
gagtgtctaatttgagtgaccaaattgattctttaccaagacttcgatttgagttgagccattgacaacttgaagcagacacaa |
231 |
Q |
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| T |
43623214 |
gagtgcctaatttgagcgaccaaattgattcttttacaagactttggtttgggttgagtcgtcgacaacttgaagcagacacaa |
43623297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 8645374 - 8645417
Alignment:
| Q |
148 |
gagtgtctaatttgagtgaccaaattgattctttaccaagactt |
191 |
Q |
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| T |
8645374 |
gagtgcctaatttgagtgaccaaattgattatttaccaagactt |
8645417 |
T |
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