View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18173_low_51 (Length: 260)

Name: NF18173_low_51
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18173_low_51
NF18173_low_51
[»] chr8 (9 HSPs)
chr8 (13-231)||(42447641-42447853)
chr8 (184-242)||(14906697-14906760)
chr8 (184-242)||(4809211-4809274)
chr8 (184-242)||(9072965-9073028)
chr8 (184-242)||(29777466-29777529)
chr8 (184-242)||(33896333-33896396)
chr8 (184-242)||(44099710-44099773)
chr8 (204-244)||(33342678-33342718)
chr8 (206-242)||(43192148-43192184)
[»] chr4 (10 HSPs)
chr4 (184-242)||(37188373-37188432)
chr4 (185-242)||(47417914-47417972)
chr4 (184-242)||(2115362-2115425)
chr4 (184-242)||(9284163-9284226)
chr4 (184-242)||(9528651-9528714)
chr4 (184-242)||(20569509-20569572)
chr4 (184-242)||(25274135-25274198)
chr4 (185-242)||(53616425-53616487)
chr4 (184-242)||(38706484-38706547)
chr4 (204-242)||(45227840-45227878)
[»] chr5 (12 HSPs)
chr5 (185-242)||(37483289-37483347)
chr5 (184-242)||(21060057-21060120)
chr5 (184-242)||(34881959-34882022)
chr5 (185-242)||(781630-781692)
chr5 (186-242)||(18677242-18677303)
chr5 (184-242)||(7242026-7242089)
chr5 (184-242)||(7247201-7247264)
chr5 (184-242)||(27266633-27266696)
chr5 (184-242)||(27752167-27752230)
chr5 (204-242)||(3271201-3271239)
chr5 (204-242)||(42580130-42580168)
chr5 (202-242)||(16981534-16981574)
[»] chr7 (12 HSPs)
chr7 (184-242)||(26492605-26492668)
chr7 (184-242)||(42066836-42066899)
chr7 (185-242)||(34773951-34774013)
chr7 (185-242)||(35495950-35496012)
chr7 (185-242)||(45198808-45198870)
chr7 (184-242)||(1485030-1485093)
chr7 (184-242)||(46822255-46822318)
chr7 (204-242)||(433490-433528)
chr7 (204-242)||(7640574-7640612)
chr7 (204-242)||(22927669-22927707)
chr7 (204-242)||(23085761-23085799)
chr7 (185-242)||(32684908-32684970)
[»] chr6 (14 HSPs)
chr6 (184-242)||(8497208-8497271)
chr6 (187-242)||(7880879-7880939)
chr6 (184-242)||(4984341-4984404)
chr6 (184-242)||(12653184-12653247)
chr6 (184-242)||(17237060-17237123)
chr6 (184-242)||(23947091-23947154)
chr6 (184-242)||(25064476-25064539)
chr6 (204-242)||(8196206-8196244)
chr6 (185-242)||(16892595-16892653)
chr6 (204-242)||(17334993-17335031)
chr6 (204-242)||(35001830-35001868)
chr6 (184-240)||(3173986-3174047)
chr6 (187-242)||(7875821-7875881)
chr6 (202-242)||(16419398-16419438)
[»] chr3 (10 HSPs)
chr3 (184-242)||(25162673-25162736)
chr3 (185-242)||(32607706-32607768)
chr3 (204-242)||(38440390-38440428)
chr3 (184-242)||(4178802-4178865)
chr3 (184-242)||(25631300-25631363)
chr3 (184-242)||(36906359-36906422)
chr3 (204-242)||(3848718-3848756)
chr3 (185-242)||(29503698-29503760)
chr3 (204-242)||(37169466-37169504)
chr3 (185-242)||(50611193-50611255)
[»] chr2 (14 HSPs)
chr2 (184-242)||(36234242-36234305)
chr2 (185-242)||(4228367-4228429)
chr2 (185-242)||(21570183-21570245)
chr2 (187-242)||(38575263-38575323)
chr2 (184-242)||(4193081-4193144)
chr2 (184-242)||(7015485-7015548)
chr2 (184-242)||(21132076-21132139)
chr2 (184-242)||(25087279-25087342)
chr2 (184-242)||(27248925-27248988)
chr2 (204-242)||(30420913-30420951)
chr2 (204-242)||(45128436-45128474)
chr2 (184-240)||(8971402-8971463)
chr2 (202-242)||(6174060-6174100)
chr2 (187-242)||(40625834-40625894)
[»] chr1 (6 HSPs)
chr1 (184-242)||(30879319-30879382)
chr1 (184-242)||(9686979-9687042)
chr1 (184-242)||(11454181-11454244)
chr1 (184-242)||(27914881-27914944)
chr1 (184-242)||(51868419-51868482)
chr1 (185-242)||(35584398-35584460)
[»] scaffold0014 (1 HSPs)
scaffold0014 (185-242)||(201148-201210)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 42447641 - 42447853
Alignment:
Q  13 agaaaatagtgttcaagtaacattaaa-tacataaatatgttgacaactgattggagtacaccatttcaaatggcgcacttgcaaaggaagtgaacagag 111  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42447641 agaaaatagtgtttaagtaacattaaaatacataaatatgttgacaactgattggagcacaccatttcaaatggcgcacttgcaaaggaagtgaacagag 42447740  T
Q  112 cacgccaaataaaatgttatgatctttcnnnnnnnnnnnnnttgtatgagcggttattttatttannnnnnngacaaaaacaaaatgatattattcaaat 211  Q
    ||||||||||||||||||||||||||||             ||||||| |||| |||||| |||        ||||||||||||||||||||||||||||    
T  42447741 cacgccaaataaaatgttatgatctttcaaaaagaaaaaaattgtatgcgcgg-tatttttttt------ttgacaaaaacaaaatgatattattcaaat 42447833  T
Q  212 ctaaagattacatcattcaa 231  Q
    ||||||||||||||||||||    
T  42447834 ctaaagattacatcattcaa 42447853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 14906697 - 14906760
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  14906697 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 14906760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 4809274 - 4809211
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  4809274 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 4809211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 9073028 - 9072965
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  9073028 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 9072965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 29777529 - 29777466
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  29777529 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 29777466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 33896396 - 33896333
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  33896396 gacaaaaataaaatgatatttattcattcaaatcgagagattacatcattcaacaccgctaaaa 33896333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 44099710 - 44099773
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||  | |||||||||||||||||||||||||||    
T  44099710 gacaaaaacaaaatgatatttattcattcaaattgagagattacatcattcaacaccgctaaaa 44099773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 33342718 - 33342678
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaatg 244  Q
    ||||||||| | ||||||||| |||||||||||||||||||    
T  33342718 attcaaatcaatagattacattattcaacaccgctaaaatg 33342678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 43192148 - 43192184
Alignment:
Q  206 tcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||| | |||||||||||||||||||||||||||    
T  43192148 tcaaatcgagagattacatcattcaacaccgctaaaa 43192184  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 37188373 - 37188432
Alignment:
Q  184 gacaaaaacaaaatgatatt-attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  37188373 gacaaaaacaaaatgatattcattcaaatcgagagattacatcattcaacaccgctaaaa 37188432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 47417972 - 47417914
Alignment:
Q  185 acaaaaacaaaatgatatt-attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  47417972 acaaaaacaaaatgatattcattcaaatcgagagattacatcattcaacaccgctaaaa 47417914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 2115362 - 2115425
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  2115362 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 2115425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 9284226 - 9284163
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  9284226 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 9284163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 9528651 - 9528714
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  9528651 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 9528714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 20569572 - 20569509
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  20569572 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 20569509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 25274198 - 25274135
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  25274198 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 25274135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 53616425 - 53616487
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  53616425 acaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 53616487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 38706484 - 38706547
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||| |||||     ||||||||| | |||||||||||||||||||||||||||    
T  38706484 gacaaaaacaaaatcatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 38706547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 45227840 - 45227878
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  45227840 attcaaatcgagagattacatcattcaacaccgctaaaa 45227878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 37483347 - 37483289
Alignment:
Q  185 acaaaaacaaaatgatatt-attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||||||| ||||||||    
T  37483347 acaaaaacaaaatgatattcattcaaatcgatagattacatcattcaacatcgctaaaa 37483289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 21060057 - 21060120
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  21060057 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 21060120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 34882022 - 34881959
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  34882022 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 34881959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 781692 - 781630
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  781692 acaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 781630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 18677242 - 18677303
Alignment:
Q  186 caaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  18677242 caaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 18677303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 7242089 - 7242026
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  7242089 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 7242026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 7247264 - 7247201
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  7247264 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 7247201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 27266633 - 27266696
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||| ||||     ||||||||| | |||||||||||||||||||||||||||    
T  27266633 gacaaaaacaaaatggtattcgttcattcaaatcgagagattacatcattcaacaccgctaaaa 27266696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 27752230 - 27752167
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| ||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  27752230 gacaaaaacgaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 27752167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 3271201 - 3271239
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  3271201 attcaaatcgagagattacatcattcaacaccgctaaaa 3271239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 42580168 - 42580130
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  42580168 attcaaatcgagagattacatcattcaacaccgctaaaa 42580130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 16981574 - 16981534
Alignment:
Q  202 ttattcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||| | | |||||||||||||||||||||||||    
T  16981574 ttattcaaatcgagatattacatcattcaacaccgctaaaa 16981534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 26492668 - 26492605
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  26492668 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 26492605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 42066836 - 42066899
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  42066836 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 42066899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 34774013 - 34773951
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  34774013 acaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 34773951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 35495950 - 35496012
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  35495950 acaaaaacaaaatgatattcaatcattcaaatcgagagattacatcattcaacaccgctaaaa 35496012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 45198808 - 45198870
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  45198808 acaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 45198870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 1485030 - 1485093
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  1485030 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 1485093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 46822318 - 46822255
Alignment:
Q  184 gacaaaaacaaaatgatatta-----ttcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||||     |||||||| | |||||||||||||||||||| ||||||    
T  46822318 gacaaaaacaaaatgatattaattcattcaaatcgagagattacatcattcaacaccactaaaa 46822255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 433490 - 433528
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  433490 attcaaatcgagagattacatcattcaacaccgctaaaa 433528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 7640574 - 7640612
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  7640574 attcaaatcgagagattacatcattcaacaccgctaaaa 7640612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 22927669 - 22927707
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  22927669 attcaaatcgagagattacatcattcaacaccgctaaaa 22927707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 23085799 - 23085761
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  23085799 attcaaatcgagagattacatcattcaacaccgctaaaa 23085761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 32684970 - 32684908
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | ||| |||||||||||||||||||||||    
T  32684970 acaaaaacaaaatgatattcattcattcaaatcgagagactacatcattcaacaccgctaaaa 32684908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 8497271 - 8497208
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  8497271 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 8497208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 7880879 - 7880939
Alignment:
Q  187 aaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  7880879 aaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 7880939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 4984341 - 4984404
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  4984341 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 4984404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 12653247 - 12653184
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||| ||||| | |||||||||||||||||||||||||||    
T  12653247 gacaaaaacaaaatgatattcattcatttaaatcgagagattacatcattcaacaccgctaaaa 12653184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 17237060 - 17237123
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||| ||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  17237060 gacaacaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 17237123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 23947091 - 23947154
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | ||||||||||||||||| |||||||||    
T  23947091 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacgccgctaaaa 23947154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 25064539 - 25064476
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  25064539 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 25064476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 8196206 - 8196244
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  8196206 attcaaatcgagagattacatcattcaacaccgctaaaa 8196244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 16892595 - 16892653
Alignment:
Q  185 acaaaaacaaaatgatatt-attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||| ||||| ||||| ||||||||| | |||||||||||||||||||| ||||||    
T  16892595 acaaaaataaaattatattcattcaaatcgagagattacatcattcaacaccactaaaa 16892653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 17335031 - 17334993
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  17335031 attcaaatcgagagattacatcattcaacaccgctaaaa 17334993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 35001868 - 35001830
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  35001868 attcaaatcaaaagattacatcattcaacatcgctaaaa 35001830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 3173986 - 3174047
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaa 240  Q
    |||||||||||||| |||||     ||||||||| ||| |||||||||||||||||||||||    
T  3173986 gacaaaaacaaaataatattcgttcattcaaatcgaaaaattacatcattcaacaccgctaa 3174047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 7875821 - 7875881
Alignment:
Q  187 aaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||     ||| ||||| | |||||||||||||||||||||||||||    
T  7875821 aaaaacaaaatgatattcattcatttaaatcgagagattacatcattcaacaccgctaaaa 7875881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 16419438 - 16419398
Alignment:
Q  202 ttattcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||  | |||||||||||||||||||||||||||    
T  16419438 ttattcaaattgagagattacatcattcaacaccgctaaaa 16419398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 25162736 - 25162673
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  25162736 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 25162673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 32607768 - 32607706
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  32607768 acaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 32607706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 38440390 - 38440428
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  38440390 attcaaatcgaaagattacatcattcaacaccgctaaaa 38440428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 4178865 - 4178802
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | ||||||||||||||||||| |||||||    
T  4178865 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacactgctaaaa 4178802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 25631300 - 25631363
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  25631300 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 25631363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 36906422 - 36906359
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  36906422 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 36906359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 3848718 - 3848756
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  3848718 attcaaatcgagagattacatcattcaacaccgctaaaa 3848756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 29503760 - 29503698
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | ||||||||| |||||||||||||||||    
T  29503760 acaaaaacaaaatgatattcattcattcaaatcaatagattacattattcaacaccgctaaaa 29503698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 37169504 - 37169466
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  37169504 attcaaatcaatagattacatcattcaacaccgctaaaa 37169466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 50611193 - 50611255
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | | |||||||||||||||||||||||||    
T  50611193 acaaaaacaaaatgatattcattcattcaaatcgagatattacatcattcaacaccgctaaaa 50611255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 36234305 - 36234242
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  36234305 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 36234242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 4228429 - 4228367
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  4228429 acaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 4228367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 21570183 - 21570245
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  21570183 acaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 21570245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 38575263 - 38575323
Alignment:
Q  187 aaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  38575263 aaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 38575323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 4193144 - 4193081
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | ||||||||||||||||| |||||||||    
T  4193144 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacgccgctaaaa 4193081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 7015485 - 7015548
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | ||||||||||||||||||| |||||||    
T  7015485 gacaaaaacaaaatgatatttattcattcaaatcgagagattacatcattcaacacagctaaaa 7015548  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 21132139 - 21132076
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||| ||||||||||||     ||||||||| ||| |||||||||||||||||||||||||    
T  21132139 gacaaaatcaaaatgatattcattcattcaaatcgaaaaattacatcattcaacaccgctaaaa 21132076  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 25087342 - 25087279
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||| ||||||    
T  25087342 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccactaaaa 25087279  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 27248925 - 27248988
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||| ||||||||||||||||||||    
T  27248925 gacaaaaacaaaatgatattcattcattcaaatcgagagattatatcattcaacaccgctaaaa 27248988  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 30420951 - 30420913
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  30420951 attcaaatcgagagattacatcattcaacaccgctaaaa 30420913  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 45128474 - 45128436
Alignment:
Q  204 attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  45128474 attcaaatcgagagattacatcattcaacaccgctaaaa 45128436  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 8971402 - 8971463
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaa 240  Q
    |||||||||||||||||||      ||||||||| | |||||||||||||||||||||||||    
T  8971402 gacaaaaacaaaatgatatccattcattcaaatcgagagattacatcattcaacaccgctaa 8971463  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 6174100 - 6174060
Alignment:
Q  202 ttattcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  6174100 ttattcaaatcgagagattatatcattcaacaccgctaaaa 6174060  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 40625834 - 40625894
Alignment:
Q  187 aaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||     ||||||||| | |||||||||||||||||| ||||||||    
T  40625834 aaaaacaaaatgatattcatccattcaaatcgagagattacatcattcaacatcgctaaaa 40625894  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 30879382 - 30879319
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  30879382 gacaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 30879319  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 9686979 - 9687042
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | | |||||||||||||||||||||||||    
T  9686979 gacaaaaacaaaatgatattcattcattcaaatcgagatattacatcattcaacaccgctaaaa 9687042  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 11454244 - 11454181
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  11454244 gacaaaaataaaatgatatttattcattcaaatcgagagattacatcattcaacaccgctaaaa 11454181  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 27914881 - 27914944
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    ||||||||||||||||||||     ||||||||| | | |||||||||||||||||||||||||    
T  27914881 gacaaaaacaaaatgatattcattcattcaaatcaagatattacatcattcaacaccgctaaaa 27914944  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 51868419 - 51868482
Alignment:
Q  184 gacaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||| |||||||||||     ||||||||| | |||||||||||||||||||||||||||    
T  51868419 gacaaaaataaaatgatattcattcattcaaatcgagagattacatcattcaacaccgctaaaa 51868482  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 35584398 - 35584460
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | |||||||||||||||| ||||||||||    
T  35584398 acaaaaacaaaatgatattcattcattcaaatcgagagattacatcattcaataccgctaaaa 35584460  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 201148 - 201210
Alignment:
Q  185 acaaaaacaaaatgatatt-----attcaaatctaaagattacatcattcaacaccgctaaaa 242  Q
    |||||||||||||||||||     ||||||||| | |||||||||||||||||||| ||||||    
T  201148 acaaaaacaaaatgatattcattcattcaaatcgatagattacatcattcaacaccactaaaa 201210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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