View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18173_low_52 (Length: 257)
Name: NF18173_low_52
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 5523599 - 5523829
Alignment:
| Q |
11 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5523599 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
5523698 |
T |
|
| Q |
111 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagttacaacatgagtaagctaaacacata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
5523699 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgccttaaatgacatcaaagttacaacatgagtaagctaaacacata |
5523798 |
T |
|
| Q |
211 |
taatgtgaattttgattgattggtttatttt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5523799 |
taatgtgaattttgattgattggtttatttt |
5523829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 5487914 - 5488144
Alignment:
| Q |
11 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
110 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5487914 |
cacagatgacatgttaggcctattttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
5488013 |
T |
|
| Q |
111 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagttacaacatgagtaagctaaacacata |
210 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
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|
| T |
5488014 |
tataatacgtcagctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatgacatcaaagttacaacatgagtaagctcaacactta |
5488113 |
T |
|
| Q |
211 |
taatgtgaattttgattgattggtttatttt |
241 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |
|
|
| T |
5488114 |
taatgtggattttgattgattgatttatttt |
5488144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 5500731 - 5500959
Alignment:
| Q |
11 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
110 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||||| |||||||| ||||||||| ||||||||| |
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|
| T |
5500731 |
cacagatgacatgttaggcctattttctggtttctgttgtacacacaatagacccacatgaataaatcttagtatttctgtacatatggcgtcatcatca |
5500830 |
T |
|
| Q |
111 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagttacaacatgagtaagctaaacacata |
210 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| || |
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|
| T |
5500831 |
tataatacgtcagctattaactccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagttacaacatgagtaagctcaacactta |
5500930 |
T |
|
| Q |
211 |
taatgtgaattttgattgattggtttatt |
239 |
Q |
| |
|
||||||| |||||||||||||| |||||| |
|
|
| T |
5500931 |
taatgtggattttgattgattgatttatt |
5500959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 5856252 - 5856077
Alignment:
| Q |
11 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
5856252 |
cacagatgacatattaggcctatcttctggtagctgttgtacacacaatagaccaacatgaataaatcttattatttctgaacatatgggctcatcatcg |
5856153 |
T |
|
| Q |
111 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagtta |
186 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
5856152 |
tctaatatgtctgctattaactctagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagtta |
5856077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 20341521 - 20341747
Alignment:
| Q |
11 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
110 |
Q |
| |
|
|||||||||||| |||||||||| ||||| | ||| ||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
20341521 |
cacagatgacatgttaggcctattttctgctttctgttgtacacacaataaacccacatgaataaatcttattatatctgaacatatggcctcatcat-- |
20341618 |
T |
|
| Q |
111 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagttacaacatgagtaagctaaacacata |
210 |
Q |
| |
|
|| ||||||| |||||||||||| || |||||||||||||||||| ||||||||||||||| |||||| ||||||| | ||||||||| |||| || |
|
|
| T |
20341619 |
-atgatatgtcagctattaactcctttgccctttcttcaatccatagtctccatgcctaaaatgacatcaaggttacaaaaagagtaagctcaacattta |
20341717 |
T |
|
| Q |
211 |
taatgtgaattttgattgattggtttattt |
240 |
Q |
| |
|
| | ||| |||||||||||||||||||||| |
|
|
| T |
20341718 |
tgaagtggattttgattgattggtttattt |
20341747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 5482489 - 5482720
Alignment:
| Q |
11 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
110 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||| || || |||||||||||||||||||||||||||||||||| |||| ||||| | ||||||| |
|
|
| T |
5482489 |
cacagatgacatgttaggcctattttctggtttctgttgaacacacaatagaccaacatgaataaatcttattatttttgaagatatgac---atcatca |
5482585 |
T |
|
| Q |
111 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagttacaacatgagtaagct----aaaca |
206 |
Q |
| |
|
|| ||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||| || || |
|
|
| T |
5482586 |
tacgatatgtcagctattaactccagtgtccttccttcaatccatagtctccatgcctaaaatgacatcaaagttacaacaagagaaagctcatcaatca |
5482685 |
T |
|
| Q |
207 |
catataatgtgaattttgattgattggtttatttt |
241 |
Q |
| |
|
| ||||| ||| |||||||||||||| |||||||| |
|
|
| T |
5482686 |
cttataaagtggattttgattgattgatttatttt |
5482720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 5851214 - 5851026
Alignment:
| Q |
13 |
cagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatcata |
112 |
Q |
| |
|
|||||||||| |||||||||| ||||||| ||| ||||| |||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
5851214 |
cagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcctcatcatcgta |
5851115 |
T |
|
| Q |
113 |
taatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagttacaacatgagtaagct |
201 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||||||| ||||||||| ||||||||| ||||| ||| ||| ||||| || || |||||| |
|
|
| T |
5851114 |
taatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataagct |
5851026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 5444253 - 5444422
Alignment:
| Q |
15 |
gatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatcatata |
114 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
5444253 |
gatgacatgttaggcctattttccggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacacattgcc---tcatcatata |
5444349 |
T |
|
| Q |
115 |
atatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagttac |
187 |
Q |
| |
|
||||||| || ||||||||| ||| || |||||||||| | ||||||||||||||||| |||||| ||||| |
|
|
| T |
5444350 |
atatgtcagccattaactcctctggcctgccttcaatccacaatttccatgcctaaaatgacatcaaggttac |
5444422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 5452645 - 5452872
Alignment:
| Q |
11 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
110 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||| ||||| |
|
|
| T |
5452645 |
cacagatgacatgttaggcctattttctggtttctgttgtacacacaatagaccaacatgaataaatcttattatttcggagcatattgcc---tcatcg |
5452741 |
T |
|
| Q |
111 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagttaca-acatgagtaagctaaacacat |
209 |
Q |
| |
|
||||| ||||| |||||||||||| ||| || |||||||||| ||| ||||||||||||||| |||||| |||||| ||| ||||||||| || | | |
|
|
| T |
5452742 |
tataacatgtcagctattaactcctctggcctgccttcaatccacagtctccatgcctaaaatgacatcaaggttacagaca-gagtaagctcaa-tcct |
5452839 |
T |
|
| Q |
210 |
ataatgtgaattttgattgattggtttattttt |
242 |
Q |
| |
|
|||| ||| |||||| ||||||| ||||||||| |
|
|
| T |
5452840 |
ataaagtggattttggttgattgatttattttt |
5452872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 5830395 - 5830221
Alignment:
| Q |
11 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
110 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |
|
|
| T |
5830395 |
cacagatgacatgttaggcctattttctggtttctgttgtacacacaatagaccaacatgaataaatcttattatttttgaagatatgg---catcatca |
5830299 |
T |
|
| Q |
111 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagttaca |
188 |
Q |
| |
|
|| ||||||| ||||| |||||||||| |||||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
5830298 |
tacgatatgtcagctatgaactccagtgacctttcttcaatccataatcgccatgcctaaagaaacatcaaagttaca |
5830221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 5804650 - 5804478
Alignment:
| Q |
11 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
110 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||| ||||| |||||||| ||||||||||||||||||||||||| |||| ||||| |||| |||| |
|
|
| T |
5804650 |
cacagatgacatgttaggcctattttctggtttctgttgtacacacaatagcccaacatgaataaatcttattatttttgaagatatg---tcattatca |
5804554 |
T |
|
| Q |
111 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatggcatcaaagtta |
186 |
Q |
| |
|
||||||||||| || | |||||| ||| |||| |||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
5804553 |
tataatatgtcagcaagcaactcctctggcctttgctcaatccatagtctccatgcctaaaatgacatcaaagtta |
5804478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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