View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_53 (Length: 256)
Name: NF18173_low_53
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 38091672 - 38091897
Alignment:
| Q |
10 |
attatactctcaaactctactcattgtgtctgtcagtgttaaatttaagatctttatactaaataaaattccaactttaaataatgttataaaattaact |
109 |
Q |
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| T |
38091672 |
attatactctcaaactctactcattgtgtctgttagtgttaaattttagatctttatactaaataaaattctaactttaaaaaatgttataaaattaact |
38091771 |
T |
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| Q |
110 |
catagttttgatttttcttcttgagctgagtactagctcaagatgtagctcaaaatttgacaagtgcaaaaaggtatgctgtacttgtgcatgcaattga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38091772 |
catagttttgatttttcttcttgagctgagtactagctcaagatctagctcaaaatttgacaagtgcaaaaaggtatgttgtacttgtgcatgcaattga |
38091871 |
T |
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| Q |
210 |
acttggaggtatctcgcagtcatgcg |
235 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
38091872 |
acttggaggtatcttgcagtcatgcg |
38091897 |
T |
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