View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_57 (Length: 251)
Name: NF18173_low_57
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 33272799 - 33272994
Alignment:
| Q |
18 |
agttgagagaagcgtgggagtgtgttttggaagatgaagcaatggaacaactaacgtagtnnnnnnntcatagattaatgtacataatttaattatattc |
117 |
Q |
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| T |
33272799 |
agttgagagaagcgtgggagtgtgttttggaagatgaagcaatggaacaactaacgtagtaaaaaaatcatagattaatgtacataatttaattatattc |
33272898 |
T |
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| Q |
118 |
tactataggagtatataaaaataatactactagttaagaattaagattcttctttttctttcttnnnnnnntaataattaagattcatcttttttgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
33272899 |
tactataggagtatataaaaataatactactagttaagaattaagattcttcttcttctttcttcaaaaaa-aataattaagattcatcttttttgt |
33272994 |
T |
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