View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_58 (Length: 250)
Name: NF18173_low_58
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_58 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 11622012 - 11621771
Alignment:
| Q |
9 |
agcataggtgttcattaccagcaattctcagtattttaggattgctgccgagagaatattatcaattaaattaggtattcttaatatctctgataaatca |
108 |
Q |
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| T |
11622012 |
agcataggtgttcattaccagcaattctcagtattttaggattgctgccgagagaatattatcaattaaattaggtattcttaatatctctgataaatca |
11621913 |
T |
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| Q |
109 |
acatgccgtagatcctaaggttgtttatatacatgttcgtatacttatttgacttctgtactaaagtataaatatagttctaatttgtgtattaaagatg |
208 |
Q |
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| T |
11621912 |
acatgccgtagatcctaaggttgtttatatacatgttcgtatacttatttgacttctgtactaaagtatgaatatagttctaatttgtgtattaaagatg |
11621813 |
T |
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| Q |
209 |
tctagtatgcaattagttactatcaaaactaatttcaacatc |
250 |
Q |
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| T |
11621812 |
tctagtatgcaattagttactatcaaaattaatttcaacatc |
11621771 |
T |
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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 11640491 - 11640305
Alignment:
| Q |
13 |
taggtgttcattaccagcaattctcagtattttaggattgctgccgagagaatattatcaattaaattaggtattcttaa--tatctctgataaatcaac |
110 |
Q |
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| T |
11640491 |
taggtgttcattatcagcgactctctgaattttaggagtactgttgagagactattatcaatgaaatcaggtatttttaaaatatctttgataaatcaac |
11640392 |
T |
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| Q |
111 |
atgccgtagatcctaaggttgtttatatacatgttcgtatacttatttgacttctgtactaaagtataaatatagttctaatttgtg |
197 |
Q |
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| T |
11640391 |
acgccgtagatcctaaggttgttgatatgcatgttcatatatttatttgacttccacactaaagtatgattatagttttaatttgtg |
11640305 |
T |
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