View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_6 (Length: 692)
Name: NF18173_low_6
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 615; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 17 - 687
Target Start/End: Original strand, 47942049 - 47942719
Alignment:
| Q |
17 |
actttgggattcaagaagaaaagcaggtatcctctacacaatttgttaggttaagatacacaattcattagtttgataacgaggagaggaatcaaagttg |
116 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47942049 |
actttgggatccaagaagaaaagcaggtatcctctacacaatttgttaggttaagatacacaattcattagtttgataacgatgagaggaatcaaagttg |
47942148 |
T |
|
| Q |
117 |
aaatgaaaattacaggtagtagtaattaataacgtaccttaatagtgtgattttttaaggcaggatggtcaaaagcgggttgtttgtaaatatcgacaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47942149 |
aaatgaaaattacaggtagtagtaattaataacgtaccttaatagtgtgattttttaaggcaggatggtcaaaagcgggttgtttgtaaatatcgacaca |
47942248 |
T |
|
| Q |
217 |
atcaataatgtcaccatcttcactctgcataaaatatgaagtcaaatttgtctgtcgacacaacaattccaaatcatctaagacataatattcttagcgt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| |
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| T |
47942249 |
atcaataatgtcaccatcttcactctgcataaaatatgaagtcaaatttgtctgtcgacacaacaattcaaaatcttctaaggcataatattcttagcgt |
47942348 |
T |
|
| Q |
317 |
gtatcaataatattttcgccgtttcnnnnnnnntaaactaactaaacgatttgatttacgtgcatatataataaattctaaactgcagatatttgttcat |
416 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47942349 |
gtattaataatattttcgccgtttcaaaaaaaataaactaactaaacgatttgatttacgtgcatatataataaattctaaactgcagatatttgttcat |
47942448 |
T |
|
| Q |
417 |
attcataaaaataaatttgtctagaatgtaaaatctaaactgattgtctaactggaatggcagagatatatggaattgcataccttgatggatttcactg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47942449 |
attcataaaaataaatttgtctagaatgtaaaatctaaactgattgtctaactggaatggcagagatatatggaattgcataccttgatggatttcactg |
47942548 |
T |
|
| Q |
517 |
caggcttgtttagaagtttcaatttggcttcaatttctctttctaaagatgatgatgttgcttcaactttcgatactagaatggtagtacacaagccaaa |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47942549 |
caggcttgtttagaagtttcaatttggcttcaatttctctttctaaagatgatgatgttgcttcaactttcgatactagaatggtattacacaagccaaa |
47942648 |
T |
|
| Q |
617 |
gaacatccaaagcaacaatatggcaaccttgcatttccccattccaccttgagatccttccttcatctctc |
687 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47942649 |
gaacatccaaagcaacaatatggcaaccttgcatttccccattccaccttgagatccttccttcatttctc |
47942719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 495 - 668
Target Start/End: Original strand, 47949195 - 47949374
Alignment:
| Q |
495 |
cataccttgatggatttcactgcaggcttgtttagaagtttcaatttggcttcaatttctctttctaaagatgatgatg------ttgcttcaactttcg |
588 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||| || ||||||||||| |||||| |||||||| ||||||||| |||||||||||||| |
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| T |
47949195 |
cataccttgatagacttcacggcaggcttgtttagaagctttaatttggcttcgatttctttttctaaaaatgatgatgctgctcttgcttcaactttca |
47949294 |
T |
|
| Q |
589 |
atactagaatggtagtacacaagccaaagaacatccaaagcaacaatatggcaaccttgcatttccccattccaccttga |
668 |
Q |
| |
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|| |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47949295 |
attctagaatggtagtacacaaggcaaagaacacccaaagcaacaatattgcaaccttgcatttccccattccaccttga |
47949374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 485 - 667
Target Start/End: Original strand, 47913698 - 47913880
Alignment:
| Q |
485 |
tatggaattgcataccttgatggatttcactgcaggcttgtttagaagtttcaatttggcttcaatttctctttctaaagatg---atgatgttgcttca |
581 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| || ||| | |||| ||| |
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| T |
47913698 |
tatggaattgcataccctgatggatttcactgcaggcttgtttaagagcttcaatttggcttcgatttctctttctaaaggtgaatatgttcttgcatca |
47913797 |
T |
|
| Q |
582 |
actttcgatactagaatggtagtacacaagccaaagaacatccaaagcaacaatatggcaaccttgcatttccccattccaccttg |
667 |
Q |
| |
|
|||||| || |||| ||| || |||||| |||||||| |||||||||||||| | ||||||| |||||||||||||| |||| |
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|
| T |
47913798 |
actttcaattctagtatg---gtgcacaagttaaagaacacacaaagcaacaatattggaaccttgtatttccccattccaacttg |
47913880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 485 - 586
Target Start/End: Original strand, 47931276 - 47931380
Alignment:
| Q |
485 |
tatggaattgcataccttgatggatttcactgcaggcttgtttagaagtttcaatttggcttcaatttctctttctaaagatgatgatg---ttgcttca |
581 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| ||| |||| |||||||| |
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| T |
47931276 |
tatgaaattgcataccctgatggatttcactgcaggcttgtttaagagcttcaatttggcttctatttctctttctaaaggtgaggatgcttttgcttca |
47931375 |
T |
|
| Q |
582 |
acttt |
586 |
Q |
| |
|
||||| |
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|
| T |
47931376 |
acttt |
47931380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 485 - 564
Target Start/End: Original strand, 47921842 - 47921921
Alignment:
| Q |
485 |
tatggaattgcataccttgatggatttcactgcaggcttgtttagaagtttcaatttggcttcaatttctctttctaaag |
564 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||||||||||| || |||||||||||||| |||||||||||||||| |
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| T |
47921842 |
tatgaaattgcataccctgattgatttcactgcaggcttgtttaagagcttcaatttggcttcgatttctctttctaaag |
47921921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 47930731 - 47930834
Alignment:
| Q |
133 |
tagtagtaattaataacgtaccttaatagtgtgattttttaaggcaggatggtcaaaagcgggttgtttgtaaatatcgacacaatcaataatgtcacca |
232 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||||||||||| |||||||| || ||||| ||||||| || || | ||||||||||||||||| ||| |
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| T |
47930731 |
tagtagtaattaataacgcacctgaataatgtgattttttaaagcaggatgatctaaagcaagttgtttatagatgttaacacaatcaataatgtctcca |
47930830 |
T |
|
| Q |
233 |
tctt |
236 |
Q |
| |
|
|||| |
|
|
| T |
47930831 |
tctt |
47930834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 47948803 - 47948894
Alignment:
| Q |
152 |
accttaatagtgtgattttttaaggcaggatggtcaaaagcgggttgtttgtaaatatcgacacaatcaataatgtcaccatcttcactctg |
243 |
Q |
| |
|
|||| ||||||||||||| | |||||||||||||||||||||||||||||||| || | || || |||||||| || |||||||||||||| |
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|
| T |
47948803 |
acctgaatagtgtgatttatcaaggcaggatggtcaaaagcgggttgtttgtatatgttgatgcagtcaataatatctccatcttcactctg |
47948894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 47921663 - 47921769
Alignment:
| Q |
139 |
taattaataacgtaccttaatagtgtgattttttaaggcaggatggtcaaaagcgggttgtttgtaaatatcgacacaatcaataatgtcaccatcttca |
238 |
Q |
| |
|
|||||||| | | |||| |||| | |||||||||||||||||||| |||||||| ||||||| ||| || | ||| || |||||||| || ||||||| | |
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|
| T |
47921663 |
taattaattatgcacctgaatactatgattttttaaggcaggatgatcaaaagccggttgttcgtagatgttgacgcagtcaataatatctccatcttga |
47921762 |
T |
|
| Q |
239 |
ctctgca |
245 |
Q |
| |
|
||||||| |
|
|
| T |
47921763 |
ctctgca |
47921769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 245
Target Start/End: Original strand, 47913420 - 47913530
Alignment:
| Q |
135 |
gtagtaattaataacgtaccttaatagtgtgattttttaaggcaggatggtcaaaagcgggttgtttgtaaatatcgacacaatcaataatgtcaccatc |
234 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||| |||||||||||||| || ||| ||||| || || || ||||||||||||||||| ||||| |
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|
| T |
47913420 |
gtagtaattaataacgcacccgaatactgtgattctttaaggcaggatgatctaaactaggttgattatagatgctaacacaatcaataatgtctccatc |
47913519 |
T |
|
| Q |
235 |
ttcactctgca |
245 |
Q |
| |
|
||| ||||||| |
|
|
| T |
47913520 |
ttcgctctgca |
47913530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 50198962 - 50198904
Alignment:
| Q |
164 |
tgattttttaaggcaggatggtcaaaagcgggttgtttgtaaatatcgacacaatcaat |
222 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
50198962 |
tgattttttaataaaggatgatcaaaagctggttgtttgtaaatatcaacacaatcaat |
50198904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 47943127 - 47943088
Alignment:
| Q |
245 |
ataaaatatgaagtcaaatttgtctgtcgacacaacaatt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
47943127 |
ataaaatatgaagtcaaatttgtctgtctacacaagaatt |
47943088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 667
Target Start/End: Original strand, 47921953 - 47922006
Alignment:
| Q |
614 |
aaagaacatccaaagcaacaatatggcaaccttgcatttccccattccaccttg |
667 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||| |||||||||||||| |||| |
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|
| T |
47921953 |
aaagaacacacaaagcaacaatattggaaccttgtatttccccattccaacttg |
47922006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 47910721 - 47910769
Alignment:
| Q |
17 |
actttgggattcaagaagaaaagcaggtatcctctacacaatttgttag |
65 |
Q |
| |
|
|||||||||||||||||||||| | |||| | ||| ||||||||||||| |
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|
| T |
47910721 |
actttgggattcaagaagaaaatcgggtaccatctgcacaatttgttag |
47910769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 3858976 - 3858880
Alignment:
| Q |
152 |
accttaatagtgtgattttttaaggcaggatggtcaaaagcgggttgtttgtaaatatcgacacaatcaataatgtcaccatcttcactctgcataa |
248 |
Q |
| |
|
|||| ||| ||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||| ||||||||||| || |||| |||||||||||||| |
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|
| T |
3858976 |
acctgaattgtgtggttttttaagacaggatggtcaaaagcaggttgtttataaatgtcgacgcaatcaataatatctccattttcactctgcataa |
3858880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 553
Target Start/End: Complemental strand, 3858246 - 3858189
Alignment:
| Q |
496 |
ataccttgatggatttcactgcaggcttgtttagaagtttcaatttggcttcaatttc |
553 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
3858246 |
ataccttgatggttttcactgcaggcctgttatggagtttcaatttggcttcaatttc |
3858189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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