View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_60 (Length: 249)
Name: NF18173_low_60
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_60 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 46151978 - 46151840
Alignment:
| Q |
112 |
catatgttctttctcctccatcatccatt-gcttaacctgttcatcaaagcccagaagctggatccaaatcctatcttatatgtatcaattctaaaccac |
210 |
Q |
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| T |
46151978 |
catatgttctttctccttcatcatccatttgcttaacctgttcatcaaatcccagaagctggatccaaatcctatcttatatgtatcaattctaaaccac |
46151879 |
T |
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| Q |
211 |
tttacgacatccacataaaaagaaatttctcacaaatcc |
249 |
Q |
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| T |
46151878 |
tttacgacatccacataaaaagaaatttctcacaaatcc |
46151840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 45992065 - 45991920
Alignment:
| Q |
112 |
catatgttctttctcctccatcatccattgcttaacctgttcatcaaagcccagaagctggatccaaatcctatctt--------atatgtatcaattct |
203 |
Q |
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| T |
45992065 |
catatgttctttctccttcatcatccattgcttaacctgttcatcaaagcccagaagctggatccaaatcctatcttatatatatatatgtatcaattct |
45991966 |
T |
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| Q |
204 |
aaaccactttacgacatccacataaaaagaaatttctcacaaatcc |
249 |
Q |
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| T |
45991965 |
aaaccattttacgacatccacataaaaagaaatttctcacagatcc |
45991920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 3871989 - 3871930
Alignment:
| Q |
190 |
tatgtatcaattctaaacc-actttacgacatccacataaaaagaaatttctcacaaatcc |
249 |
Q |
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| T |
3871989 |
tatgtatcaattccaaacccattttacgacatccacat-aaaataaatttctcacaaatcc |
3871930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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