View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_61 (Length: 248)
Name: NF18173_low_61
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_61 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 22070646 - 22070887
Alignment:
| Q |
7 |
gattatacttgagtgattatgtatttggtcttgacaacatttttaacaaaactgaagcatggtatacaggtatagtatatcaaaatatacagatattatg |
106 |
Q |
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| T |
22070646 |
gattatacttgagtgattatgtatttggtcttgacaacatttttaacaaaactgaagcatggtatacaggtatagtatatcaaaatatacagatattatg |
22070745 |
T |
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| Q |
107 |
cccaaataattgaatgatcctatttcagtttttaattagagcttgattatctgtcctaaatttaagtatgaatatatttttgggatatagaatttgattt |
206 |
Q |
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| T |
22070746 |
cccaaataattgaatgatcctatttcagtttttaattagagcttgattatctgtcctaaatttaagtatgaatatatttttgggatatagaatttgattt |
22070845 |
T |
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| Q |
207 |
caacagcataacccccatgttgtctttggtgcaggtttgtat |
248 |
Q |
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| T |
22070846 |
caacaaaataacccccatgttgcctttggtgcaggtttgtat |
22070887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 22082172 - 22082247
Alignment:
| Q |
94 |
tacagatattatgcccaaataattgaatgatcctatttcagtttttaattagagcttgattatctgtcctaaatttaagta |
174 |
Q |
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| T |
22082172 |
tacagatattatgcccaaataaatgaatgatcctatttc-gttgttaa----agcatgaatatctgtcctaaatttaagta |
22082247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 660602 - 660556
Alignment:
| Q |
142 |
ttagagcttgattatctgtcctaaatttaagtatgaatatatttttg |
188 |
Q |
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| T |
660602 |
ttagaccttgattatctgtcatgaatttaagtatgaatatatttttg |
660556 |
T |
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