View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_7 (Length: 659)
Name: NF18173_low_7
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 14 - 649
Target Start/End: Complemental strand, 32485202 - 32484567
Alignment:
| Q |
14 |
caactacaagaacttatcatgacaaataggaatctcattctcatcatcatggcaaagttatgagctgttaccacaaaacctatcttcttcctttcacatt |
113 |
Q |
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| T |
32485202 |
caactacaagaacttatcatgacaaataggaatctcattctcatcatcatggcaaagttatgagctgttaccacaaaacctatcttcttcctttcacatt |
32485103 |
T |
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| Q |
114 |
tgtgccaacagttannnnnnngacacaatctgaagaatgtaggtggggtaattactggatgcattttgcttgcatcctattctatagccttacagaatgg |
213 |
Q |
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| T |
32485102 |
tgtgccaatagttatttttttgacacaatctgaagaatgtaggtggggtaattactggatgcattttgcttgcatcctattctatagccttacagaatgg |
32485003 |
T |
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| Q |
214 |
tatgtgccattatgattattttgacatttttggaaggtattcttttaagtgaccacatgggaactatgaaaagaatacaaaattcattaattacttggtg |
313 |
Q |
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| T |
32485002 |
tatgtgccattatgattattttgacatttttggaaggtattcttttaagtgaccacatgggaactatgaaaagaatacaaaattcattaattacttggtg |
32484903 |
T |
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| Q |
314 |
acaaagcaattgttgtcattatgctcaaaaaatgtttggtttgagatcagtgtctgtacaaaagtacttaccaaaattgtgaatcacttctttgtctaaa |
413 |
Q |
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| T |
32484902 |
acaaagcaattgttgtcattatgctcaaaaaatgtttggtttgagatcagtgtctgtacaaaagtacttaccaaaattgtgaatcacttctttgtctaaa |
32484803 |
T |
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| Q |
414 |
tctacagaaaggtgtgaatgtagttgttacattttgatgtgaaagacattgaagcaattaatgatcttgtggggacactatagaatattctcgacattgt |
513 |
Q |
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| T |
32484802 |
tctaccgaaaggtgtgaatgtagttgttacattttgatgtgaaagacattgaagcaattaatgatcttgtggggacaatatagaatattctcgacattgt |
32484703 |
T |
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| Q |
514 |
ttcnnnnnnngtttatttaattccaacttgtaaagatggttggtttttatagtaggaaaaggtgtgattcttcaaatgcgttgtgtttatatatgattga |
613 |
Q |
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| T |
32484702 |
ttctttttttgtttatttaattccaacttgtaaagatggttggtttttacggtaggaaaaggtgtgattcttcaaatgcgttgtgtttataaatgattga |
32484603 |
T |
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| Q |
614 |
ataaataattcatgttaattcattcattttcctatg |
649 |
Q |
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| T |
32484602 |
ataaataattcatgttaattcattcattttcctatg |
32484567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 643
Target Start/End: Complemental strand, 32483228 - 32483165
Alignment:
| Q |
579 |
gattcttcaaatgcgttgtgtttatatatgattgaataaataattcatgttaattcattcatttt |
643 |
Q |
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| T |
32483228 |
gattcttcaaatgtgttgtatttataaatgattgaataaataattc-tgttaattcattcatttt |
32483165 |
T |
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