View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_70 (Length: 236)
Name: NF18173_low_70
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46151804 - 46151584
Alignment:
| Q |
1 |
atcctcaaccaccaattcttcagccacttcatcttctccaccgtatattctctccaagaaattaccatcacacataaacattcaaactcatatgcctttg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46151804 |
atcctcaaccaccaattcttcagccacttcgtcttctccaccgtatattctctccaagaaattatcatcacacataaacattcaaactcatatgcctttg |
46151705 |
T |
|
| Q |
101 |
aatccaagaagaaaatttaattagatatttgttgttgttgtgattagtggtgttgatgaagctgaaatctctgttgttgttgattatggaatgataaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46151704 |
aatccaagaagaaaatttaattagatatttgttgttgttgtgattgttggtgttgatgaagctgaaatctctgttgttgttgattatagaatgataaaag |
46151605 |
T |
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| Q |
201 |
aaggttgatggatgaaaattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
46151604 |
aaggttgatggatgaaaattt |
46151584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45991884 - 45991666
Alignment:
| Q |
1 |
atcctcaaccaccaattcttcagccacttcatcttctccaccgtatattctctccaagaaattaccatcacacataaacattcaaactcatatgcctttg |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
45991884 |
atcctcaaccaccaattcttcagccacttcgtcttctccgccgtatattttctccaagaaattatcatcaaacataaacattcaaactcat--gcctttg |
45991787 |
T |
|
| Q |
101 |
aatccaagaagaaaatttaattagatatttgttgttgttgtgattagtggtgttgatgaagctgaaatctctgttgttgttgattatggaatgataaaag |
200 |
Q |
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| T |
45991786 |
aatccaagaagaaaatttaattagatattttttgttgttgtgattgttggtgttgatgaagttgaaatctctgttgttgttgattatggaatgataaaag |
45991687 |
T |
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| Q |
201 |
aaggttgatggatgaaaattt |
221 |
Q |
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| T |
45991686 |
aaggttgatggatgaaaattt |
45991666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 221
Target Start/End: Complemental strand, 3871843 - 3871673
Alignment:
| Q |
46 |
tattctctccaagaaattaccatcacacataaacattcaaactcatatgcctttgaatccaagaagaaaatttaattagatatttgttgttgttgtgatt |
145 |
Q |
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| T |
3871843 |
tattccctcccataaattatcatcacacatgaacattcaaactc--aagcctttcaatccaagaagaaattttaattag-gatttgttgttgttgtgatt |
3871747 |
T |
|
| Q |
146 |
agtggtgttgatgaagctgaaatctctgttgttgttgattatggaatgataaaagaaggttgatggatgaaaattt |
221 |
Q |
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| | ||||||||| || || || ||||||||||||| ||||||||||||||||||| | |||||||||||||| |
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| T |
3871746 |
a--gaatttgatgaagttgcaacctttgttgttgttgatcatggaatgataaaagaaggctaatggatgaaaattt |
3871673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 5225030 - 5225105
Alignment:
| Q |
106 |
aagaagaaaatttaattagatatttgttgttgttgtgattagtggtgttgatgaagctgaaatctctgttgttgtt |
181 |
Q |
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|||||||||||||||||||| ||||| || |||| |||| |||||||||||||| | |||||| |||||||||| |
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| T |
5225030 |
aagaagaaaatttaattagaaatttgatgctgtttagattgttggtgttgatgaagtttaaatctttgttgttgtt |
5225105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 19802388 - 19802334
Alignment:
| Q |
106 |
aagaagaaaatttaattagatatttgttgttgttgtgattagtggtgttgatgaa |
160 |
Q |
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|||||||||||| ||||||| |||||||||||||| |||| ||||| ||||||| |
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| T |
19802388 |
aagaagaaaattaaattagaaatttgttgttgttgagattgttggtggtgatgaa |
19802334 |
T |
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