View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_72 (Length: 235)
Name: NF18173_low_72
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26463755 - 26463974
Alignment:
| Q |
1 |
caactagcaacacatgaaaacttgaattacatttcttagcagacagaaaccatgttgtaatggtttgataacatgtgttaattcaagagacattgacatc |
100 |
Q |
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| T |
26463755 |
caactagcaacacatgaaaacttgaattacatttcttagcagacagaaaccatgttgtaatggtttgataacatgtgttaattcaagagacattgacatc |
26463854 |
T |
|
| Q |
101 |
cttgttgtaaaattgtagtttgtataacccaactccttccgtttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctataatctt |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26463855 |
cttgttgt-aaattgtagtttgtataacccaactccttccctttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctataatctt |
26463953 |
T |
|
| Q |
201 |
ggaggtatgggttgtagtgct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
26463954 |
ggaggtatgggttgtagtgct |
26463974 |
T |
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Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 70 - 221
Target Start/End: Complemental strand, 49041969 - 49041819
Alignment:
| Q |
70 |
aacatgtgttaattcaagagacattgacatccttgttgtaaaattgtagtttgtataacccaactccttccgtttctgcaatgattgtgaaccatgacaa |
169 |
Q |
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|||| |||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
49041969 |
aacaggtgttaatccaagagacattgacattcttgttgtaaa-ttgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaa |
49041871 |
T |
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| Q |
170 |
gctaagaacaaacattaaaagctataatcttggaggtatgggttgtagtgct |
221 |
Q |
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| T |
49041870 |
gcttagaacaaacattaaaagctataatctcggaggtatgggttgtagtgct |
49041819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 31197650 - 31197717
Alignment:
| Q |
154 |
ttgtgaaccatgacaagctaagaacaaacattaaaagctataatcttggaggtatgggttgtagtgct |
221 |
Q |
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| T |
31197650 |
ttgtgaatcattacaagctaagaacaaacattaaaagctataatcttggaggtatgggttgtagtgct |
31197717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 34051978 - 34052088
Alignment:
| Q |
111 |
aattgtagtttgtataacccaactccttccgtttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctataatcttggaggtatgg |
210 |
Q |
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||||||||||||| ||| || || ||||| ||||||| ||||||||||| ||| | ||| ||||| || || |||| ||||||||||| ||||||| |
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| T |
34051978 |
aattgtagtttgtttaatcctacaccttctctttctgctatgattgtgaatcattataagttaagagggaatgttcaaagttataatcttggtggtatgg |
34052077 |
T |
|
| Q |
211 |
gttgtagtgct |
221 |
Q |
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| T |
34052078 |
gttgtagtgct |
34052088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 48062845 - 48062917
Alignment:
| Q |
1 |
caactagcaacacatgaaaacttgaat---tacatttcttagcagacagaaaccatgttgtaatggtttgata |
70 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||| |
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| T |
48062845 |
caactagcaacacatgaaaacttgaatctgtacatttcttagcagacagaagccatgtcatcatggtttgata |
48062917 |
T |
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