View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_73 (Length: 234)
Name: NF18173_low_73
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_73 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 25889825 - 25889905
Alignment:
| Q |
138 |
atacaaaagcttcgatcaaaggtttagaagttcaaatcggacaaatctccaagcaacttgatgtcaaccagacaaaaccct |
218 |
Q |
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| T |
25889825 |
atacaaaagcttcgatcaaaggtttagaagttcaaatcggacaaatctccaagcaacttgatgccaaccagacaaaaccct |
25889905 |
T |
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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 25889773 - 25889830
Alignment:
| Q |
15 |
aagaaggctggtatacaagaaaaatgatactagtctctataatcaccctactatacaa |
72 |
Q |
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| T |
25889773 |
aagaaggctggtatacaagaaaaatgatactagtctctataatcaccctactatacaa |
25889830 |
T |
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