View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_78 (Length: 226)
Name: NF18173_low_78
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_78 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26463522 - 26463747
Alignment:
| Q |
1 |
aataacaccatttttagcttcaagagaatcaggttcaaaataaaaaacctttagaaacacactcatggcttcttctctcattcccttccattcataacac |
100 |
Q |
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| T |
26463522 |
aataacaccattcttagcttcaagagaatcatgttcaaaatcaaaaacctttagaaacatactcatggcttcttctctcattcccttccattcataacac |
26463621 |
T |
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| Q |
101 |
tttcaatgaatcaaaattaagacaaaactttcaataaatcaatgaaccacaattgactataacatcttgtgtgcgttgtttttgttgttcttgtcgacgg |
200 |
Q |
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| T |
26463622 |
tttcaatgaatcaaaattaagacaaaactttcaataaatcaatgaaccgcaattgactataacatcttgtgtgcgttgtttttgttgttcttgtcgacgg |
26463721 |
T |
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| Q |
201 |
cgaaggtacgatggcgaaggtatgta |
226 |
Q |
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| T |
26463722 |
cgaaggtacgatggcgaaggtatgta |
26463747 |
T |
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Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 31197403 - 31197591
Alignment:
| Q |
1 |
aataacaccatttttagcttcaagagaatcag---gttcaaaataaaaaacctttagaaacacactcatggcttcttctctcattcccttccattcataa |
97 |
Q |
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| T |
31197403 |
aataacaccatttttagctttaagagaatcagcaggttcaaaatcaaaaacctttagaaacacactcatggcttcttctctcattcccttccattcataa |
31197502 |
T |
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| Q |
98 |
cactttcaatgaatcaaaattaagacaaaactttcaataaatcaatgaaccacaattgactataacatcttgtgtgcgttgtttttgtt |
186 |
Q |
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| T |
31197503 |
cactttcaatgaatcaaaattaagacaaaactttcaatgaatcaatgaaccgcaattgactataacatcttgtgtgcgttgtttttgtt |
31197591 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 28537179 - 28537093
Alignment:
| Q |
16 |
agcttcaagagaatcaggttcaaaataaaaaacctttagaaacacactcatggcttcttctctcattcccttccattcataacactt |
102 |
Q |
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| T |
28537179 |
agcttcaacagaatcaggttcaaaatccagaaccttctgaaacacattcttcgcttcttctctcatccctttccattcataacactt |
28537093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 29143844 - 29143806
Alignment:
| Q |
166 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
204 |
Q |
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| T |
29143844 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
29143806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 47558608 - 47558636
Alignment:
| Q |
166 |
cttgtgtgcgttgtttttgttgttcttgt |
194 |
Q |
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| T |
47558608 |
cttgtgtgcgttgtttttgttgttcttgt |
47558636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 55866928 - 55866966
Alignment:
| Q |
166 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
204 |
Q |
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| T |
55866928 |
cttgtgtgcgttgattttgttgttcttgtcgactgcgaa |
55866966 |
T |
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