View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_86 (Length: 214)
Name: NF18173_low_86
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_86 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 40280196 - 40279995
Alignment:
| Q |
3 |
ccaccgccattcccatgggccacttctaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaagactatctctggaactcttg |
102 |
Q |
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| T |
40280196 |
ccaccaccattcccatgggccacttcgaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaatactatctctggaactcttg |
40280097 |
T |
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| Q |
103 |
aatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaagaaggaacgagatctg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40280096 |
aatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaagaaggaacgagatgtg |
40279997 |
T |
|
| Q |
203 |
tg |
204 |
Q |
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|| |
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| T |
40279996 |
tg |
40279995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 40458154 - 40458355
Alignment:
| Q |
3 |
ccaccgccattcccatgggccacttctaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaagactatctctggaactcttg |
102 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40458154 |
ccaccaccattcccatgggccacttcgaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaatactatctctggaactcttg |
40458253 |
T |
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| Q |
103 |
aatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaagaaggaacgagatctg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40458254 |
aatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaagaaggaacgagatgtg |
40458353 |
T |
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| Q |
203 |
tg |
204 |
Q |
| |
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|| |
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| T |
40458354 |
tg |
40458355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 40285157 - 40284956
Alignment:
| Q |
3 |
ccaccgccattcccatgggccacttctaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaagactatctctggaactcttg |
102 |
Q |
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||||| || |||| |||||| ||||| ||||| || | |||| ||||||| |||||| ||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
40285157 |
ccaccaccgttcctatgggcaacttcaaaacgcgctaccttgtacacactggaccacttgttatctgtattgaaactccagactatctctggaactcttg |
40285058 |
T |
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| Q |
103 |
aatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaagaaggaacgagatctg |
202 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |
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| T |
40285057 |
aatgcaaattctgtaagtttcaacaagacattcagtttgatttggttgagaatttcaggaaagtgacaaggttcatagaggaaagaaggaatgagatgtg |
40284958 |
T |
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| Q |
203 |
tg |
204 |
Q |
| |
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|| |
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|
| T |
40284957 |
tg |
40284956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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