View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_89 (Length: 203)
Name: NF18173_low_89
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 9411881 - 9412054
Alignment:
| Q |
18 |
catgataacctcttcgagaagtttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttg |
117 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9411881 |
catgataacctcttggagaagcttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttg |
9411980 |
T |
|
| Q |
118 |
aaaagtgtcaatgaaagagtctctaccctattaagaaagctatgatccttaaatttacggggataacacaggtt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9411981 |
aaaagtgtcaatgaaagagtctctaccctattaagaaagctatgatccttaaatttacggggataacacaggtt |
9412054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 7554949 - 7555128
Alignment:
| Q |
18 |
catgataacctcttcgagaagtttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttg |
117 |
Q |
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|||||||||||||| |||||| || |||||||||||||||| | |||||| ||||||||||||||| ||| |||||||||||||| ||||||||||| |
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| T |
7554949 |
catgataacctcttggagaagcttgcagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatggtcagagagattaatcctggtgagtttg |
7555048 |
T |
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| Q |
118 |
aaaagtgtcaatgaaagagtctctaccctattaagaaag---ctatgatccttaaat---ttacggggataacacaggtt |
191 |
Q |
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|||||| ||||||||||||||| | || |||||| ||| ||||||||||||||| ||||||||||||| |||||| |
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| T |
7555049 |
gaaagtgccaatgaaagagtctccaacccattaaggaagttactatgatccttaaatttattacggggataacccaggtt |
7555128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 9587021 - 9587154
Alignment:
| Q |
27 |
ctcttcgagaagtttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgtc |
126 |
Q |
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|||||| ||||| ||||| || || ||||||| ||| || ||| || ||||| |||| ||||||||||||||||| ||| |||| ||||||||| |
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| T |
9587021 |
ctcttcaagaagattacaatttttgaacaagtggaaaagcgattggttgttgaggtagctctgaccagagagattaattttgcggagtctgaaaagtgct |
9587120 |
T |
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| Q |
127 |
aatgaaagagtctctaccctattaagaaagctat |
160 |
Q |
| |
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|| ||||||||||| |||| || |||||||||| |
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| T |
9587121 |
aacgaaagagtctcaaccccatggagaaagctat |
9587154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 28673571 - 28673460
Alignment:
| Q |
22 |
ataacctcttcgagaagtttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaa |
121 |
Q |
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||||||||||||||||| |||||||| || | ||| | ||| |||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||| |
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| T |
28673571 |
ataacctcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatgtagtgatgatgagagagattaaccttgcagagtttgaaaa |
28673472 |
T |
|
| Q |
122 |
gtgtcaatgaaa |
133 |
Q |
| |
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||| |||||||| |
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| T |
28673471 |
gtggcaatgaaa |
28673460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 28695821 - 28695700
Alignment:
| Q |
22 |
ataacctcttcgagaagtttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaa |
121 |
Q |
| |
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||||||||||||||||| || ||||| || | ||||| ||| |||| | | |||||||||||||||||| ||||||||||| |||| ||||||||||| |
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| T |
28695821 |
ataacctcttcgagaagcttgcagttgtttatcaagtggaaaagtggttggccgttgatgtagtgatgacgagagagattaaccttgcagagtttgaaaa |
28695722 |
T |
|
| Q |
122 |
gtgtcaatgaaagagtctctac |
143 |
Q |
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||| |||||||| || |||||| |
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| T |
28695721 |
gtggcaatgaaatagcctctac |
28695700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 41886869 - 41886774
Alignment:
| Q |
46 |
ttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgtcaatgaaagagtctct |
141 |
Q |
| |
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||||||||||||| ||| || || | ||||||||||||||||||| ||||||||||| ||| ||||||||||||| || |||||||| |||| |
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| T |
41886869 |
ttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaagaggctct |
41886774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 29021555 - 29021675
Alignment:
| Q |
22 |
ataacctcttcgagaagtttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaa |
121 |
Q |
| |
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||||| ||||||||||| |||||||| || | |||| ||| |||||| ||||||||| ||| ||||| |||||||| || |||| |||||| |||| |
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| T |
29021555 |
ataacttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgatatagcaatgacgagagagatcaaccttgcggagtttaaaaa |
29021654 |
T |
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| Q |
122 |
gtgtcaatgaaagagtctcta |
142 |
Q |
| |
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||| |||||||| || ||||| |
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| T |
29021655 |
gtgacaatgaaatagcctcta |
29021675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 532582 - 532696
Alignment:
| Q |
26 |
cctcttcgagaagtttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgt |
125 |
Q |
| |
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|||| |||||||| ||||| || || ||||||| ||| || ||| |||||||||||||| |||| ||| ||||||| |||| |||||||||||||| |
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| T |
532582 |
cctcctcgagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtga |
532681 |
T |
|
| Q |
126 |
caatgaaagagtctc |
140 |
Q |
| |
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|||||||||||||| |
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| T |
532682 |
taatgaaagagtctc |
532696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 8186661 - 8186543
Alignment:
| Q |
18 |
catgataacctcttcgagaagtttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttg |
117 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||| ||||||| || || || |||||||||| |||| |||| ||| ||||||| |||| |||||| |
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| T |
8186661 |
catgataacctcttcgagatgcttacaattctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttg |
8186562 |
T |
|
| Q |
118 |
aaaagtgtcaatgaaagag |
136 |
Q |
| |
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||||||| ||||||||||| |
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| T |
8186561 |
aaaagtgccaatgaaagag |
8186543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 1481561 - 1481632
Alignment:
| Q |
71 |
tgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgtcaatgaaagagtctcta |
142 |
Q |
| |
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||||||||| ||||| |||| |||||||||||| |||| ||||||||| |||| ||||||||||| ||||| |
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| T |
1481561 |
tgtcgttgacgtagtaatgatcagagagattaagcttgcggagtttgaagagtgccaatgaaagagcctcta |
1481632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 1755308 - 1755397
Alignment:
| Q |
19 |
atgataacctcttcgagaagtttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttg |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||| | |||||| || |||||| || ||| |||| | ||||| |||||||||||||||| |
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| T |
1755308 |
atgatgacctcttcgagaagtttacagttcctgaacaagcgaaaaagtgatcggttgtttatgtggcgatgaaaagagagattaatcttg |
1755397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 18314930 - 18314832
Alignment:
| Q |
27 |
ctcttcgagaagtttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgt |
125 |
Q |
| |
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|||||||||||| ||||||||||| ||||||| ||| || ||| ||||||||||||| |||| ||| || ||||| ||| ||||||||||||||| |
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| T |
18314930 |
ctcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatgtagtaatgatcagcgaaattaacctttcggagtttgaaaagtgt |
18314832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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