View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18173_low_9 (Length: 616)

Name: NF18173_low_9
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18173_low_9
NF18173_low_9
[»] chr7 (6 HSPs)
chr7 (1-601)||(14323861-14324466)
chr7 (1-258)||(14346054-14346312)
chr7 (1-259)||(18141947-18142201)
chr7 (1-258)||(14036024-14036282)
chr7 (1-259)||(18115379-18115633)
chr7 (1-258)||(44277823-44278079)
[»] chr3 (12 HSPs)
chr3 (1-601)||(14683302-14683903)
chr3 (8-602)||(7341622-7342221)
chr3 (13-605)||(10791881-10792469)
chr3 (8-258)||(7396368-7396621)
chr3 (13-258)||(10778707-10778951)
chr3 (133-258)||(11886989-11887113)
chr3 (1-258)||(13299618-13299873)
chr3 (1-258)||(13310276-13310531)
chr3 (433-585)||(10170540-10170693)
chr3 (213-327)||(10170807-10170919)
chr3 (204-288)||(12021819-12021905)
chr3 (213-258)||(10139507-10139552)
[»] chr1 (7 HSPs)
chr1 (14-605)||(41368828-41369412)
chr1 (1-590)||(22085793-22086379)
chr1 (14-258)||(41383735-41383977)
chr1 (237-288)||(21310450-21310502)
chr1 (471-562)||(22795096-22795187)
chr1 (244-288)||(22685042-22685087)
chr1 (201-258)||(27561642-27561699)
[»] chr8 (7 HSPs)
chr8 (14-603)||(1734689-1735271)
chr8 (1-258)||(16668111-16668369)
chr8 (1-261)||(17426253-17426511)
chr8 (1-258)||(20193311-20193567)
chr8 (433-585)||(22333983-22334135)
chr8 (202-259)||(22352348-22352405)
chr8 (202-258)||(25389314-25389370)
[»] scaffold0101 (2 HSPs)
scaffold0101 (1-590)||(46423-47010)
scaffold0101 (1-590)||(51061-51648)
[»] chr2 (8 HSPs)
chr2 (1-393)||(24953918-24954320)
chr2 (394-601)||(24950510-24950720)
chr2 (200-581)||(23190561-23190941)
chr2 (200-581)||(23611816-23612196)
chr2 (200-585)||(22647955-22648339)
chr2 (200-585)||(23615464-23615855)
chr2 (1-170)||(24967339-24967509)
chr2 (215-258)||(24967260-24967303)
[»] chr4 (9 HSPs)
chr4 (1-258)||(18108417-18108670)
chr4 (433-585)||(13277798-13277952)
chr4 (203-329)||(14714467-14714592)
chr4 (201-326)||(13277556-13277679)
chr4 (215-282)||(14557241-14557309)
chr4 (433-505)||(14557465-14557537)
chr4 (430-585)||(14714709-14714865)
chr4 (203-258)||(14776147-14776202)
chr4 (201-259)||(13292934-13292992)
[»] scaffold0051 (1 HSPs)
scaffold0051 (305-590)||(79190-79474)
[»] scaffold0323 (1 HSPs)
scaffold0323 (164-590)||(3924-4347)
[»] scaffold0740 (1 HSPs)
scaffold0740 (1-260)||(5351-5608)
[»] scaffold1701 (1 HSPs)
scaffold1701 (485-601)||(1336-1454)
[»] scaffold0130 (3 HSPs)
scaffold0130 (47-256)||(28715-28921)
scaffold0130 (199-285)||(29668-29755)
scaffold0130 (431-523)||(29902-29994)
[»] scaffold0108 (2 HSPs)
scaffold0108 (199-582)||(43610-43993)
scaffold0108 (164-258)||(22758-22853)
[»] chr6 (5 HSPs)
chr6 (434-585)||(23495954-23496106)
chr6 (433-585)||(19025959-19026112)
chr6 (201-282)||(19025721-19025803)
chr6 (203-260)||(16209539-16209596)
chr6 (202-258)||(30755858-30755914)
[»] scaffold0516 (1 HSPs)
scaffold0516 (159-268)||(11403-11511)
[»] scaffold0193 (2 HSPs)
scaffold0193 (433-526)||(27343-27436)
scaffold0193 (203-282)||(27110-27190)
[»] scaffold0026 (3 HSPs)
scaffold0026 (431-585)||(118869-119023)
scaffold0026 (202-327)||(118636-118760)
scaffold0026 (202-258)||(142548-142604)
[»] scaffold0081 (2 HSPs)
scaffold0081 (433-530)||(44829-44926)
scaffold0081 (203-282)||(44595-44675)
[»] scaffold0001 (4 HSPs)
scaffold0001 (434-530)||(115915-116011)
scaffold0001 (202-288)||(389803-389890)
scaffold0001 (202-282)||(115679-115761)
scaffold0001 (431-510)||(389570-389650)
[»] scaffold0040 (2 HSPs)
scaffold0040 (433-585)||(40736-40889)
scaffold0040 (200-326)||(41008-41132)
[»] scaffold0022 (2 HSPs)
scaffold0022 (433-562)||(57923-58055)
scaffold0022 (201-326)||(58173-58296)
[»] scaffold0023 (4 HSPs)
scaffold0023 (202-288)||(22334-22421)
scaffold0023 (433-585)||(84442-84594)
scaffold0023 (202-327)||(84705-84829)
scaffold0023 (434-510)||(22103-22179)
[»] chr5 (6 HSPs)
chr5 (433-530)||(21529767-21529864)
chr5 (202-282)||(21530019-21530100)
chr5 (202-258)||(21504377-21504433)
chr5 (202-258)||(21982944-21983000)
chr5 (202-258)||(26274427-26274483)
chr5 (202-258)||(20506649-20506705)
[»] scaffold0107 (2 HSPs)
scaffold0107 (201-288)||(28834-28922)
scaffold0107 (431-510)||(28604-28684)
[»] scaffold0253 (1 HSPs)
scaffold0253 (1-77)||(15478-15555)
[»] scaffold0270 (1 HSPs)
scaffold0270 (216-525)||(15565-15879)
[»] scaffold0241 (2 HSPs)
scaffold0241 (202-327)||(24754-24879)
scaffold0241 (433-522)||(24555-24644)
[»] scaffold0064 (1 HSPs)
scaffold0064 (164-258)||(43450-43545)
[»] scaffold0019 (2 HSPs)
scaffold0019 (431-510)||(151971-152050)
scaffold0019 (237-288)||(151766-151818)
[»] scaffold0304 (2 HSPs)
scaffold0304 (206-282)||(6127-6204)
scaffold0304 (433-585)||(6359-6512)
[»] scaffold0046 (1 HSPs)
scaffold0046 (237-288)||(30300-30352)
[»] scaffold0239 (1 HSPs)
scaffold0239 (202-288)||(17352-17440)
[»] scaffold0216 (1 HSPs)
scaffold0216 (244-288)||(20371-20416)
[»] scaffold0021 (2 HSPs)
scaffold0021 (202-259)||(18832-18889)
scaffold0021 (202-259)||(28363-28420)
[»] scaffold0169 (1 HSPs)
scaffold0169 (216-259)||(35594-35637)
[»] scaffold0005 (1 HSPs)
scaffold0005 (203-258)||(63528-63583)


Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 14323861 - 14324466
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttc-caaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||| | |||||||||||| |||||||| |||||||||| |    
T  14323861 ctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaaactagccgtttgctaactgcttggtcttatccgcaagacctgaagagcgcgtcg 14323960  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||| |||| | | ||||||||||| ||||||| |||||||||| |||||||| | | ||||||||||| |||||||  |||| ||||| | || |||||    
T  14323961 acaacttctttcatccgtcgaactagaaacaacgtcttcgattcctgctgaagcacatttgtatttttcaatggatttctttctcaaagtttcgccccat 14324060  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc-agaaacgttatgttcgaactttctctctcg 298  Q
     ||| ||||||| | |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  14324061 ctttcggtcaaacccttgactgcattaaatgctcatattctcacaaatattggctaacaaattgccccccataaacgttatgttcgaactttctctctcg 14324160  T
Q  299 attt-aggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtaga 397  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||||||||| ||| ||||||||||||||||| |||    
T  14324161 attttaggagaaacttgacgtttctgaaaaattctgatgaagtgcatttcctcagcatgacatcattcttttgacaacgggatatttcaaaaggtgcaga 14324260  T
Q  398 accgtcctcataaggacttagtgggccataccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctat 497  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| || |||||||||||||    
T  14324261 accgtcttcataaagacttagtgggccataccgtcattgggaaccatcaaaaacaactgttccatgcgatgattgacatctgttcagtatcaaaagctat 14324360  T
Q  498 atatgaccctgagtcacacttttactcttacttcgtttct-tttagttatttttactcttctcaccatccccttcttctaccttacga-tccaaagtact 595  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||    
T  14324361 atatgaccctgagtcatacttttacttttacttcgtttctctttagttatttttactcttttcaccatccccttcttctaccttacgatttcaaaatact 14324460  T
Q  596 gttcat 601  Q
    ||||||    
T  14324461 gttcat 14324466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 14346054 - 14346312
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttc-caaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| |||| ||||| |||||||||| | |||||||||||| |||||||| |||||||||| |    
T  14346054 ctaatcacatcctttcgattcaaaatcaaaactagccgttcacaaaactagctgtttgctaactgcttggtcttatccgcaagacctgaagagcgcgtcg 14346153  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||| |||| | | ||||||||||| ||||||| |||||||||| |||||||| | | |||||||||||||||||||  |||| ||||||| || |||||    
T  14346154 acaacttctttcatccgtcgaactagaaacaacgtcttcgattcctgctgaagcacatttgtatttttcgatggatttctttctcaaagcttcgccccat 14346253  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
     ||| ||||||| | |||||||||||||||| ||||||| ||| |||||||||||||||    
T  14346254 ctttcggtcaaacccttgactgcattaaatgctcatattctcacaaatattggctaaca 14346312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18141947 - 18142201
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttcc-aaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||| ||| ||||||||||||||||||| |||||||||  ||| |||||||||||| ||||| |||||||||||||||||||||   ||| |||| |    
T  18141947 ctaatcatatcctttcgattcaaaatcgaaactagccgttcataaaactagccgtttgcaaaccgcttggtcttatccacaagacct---gagtgcgtcg 18142043  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |  | |||| ||| ||| ||||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||     
T  18142044 atgacttcttttatccgacgaactaaaaacaccttcttcgattcctgctgaagtaaacttgcatttttcgatggattc-tttcacaaagctacgcccca- 18142141  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaa 259  Q
    ||||||||||||  ||||||||||||||||| |||||||| || ||||||||||||||||    
T  18142142 ttttaggtcaaacgtttgactgcattaaatggtcatatttccacaaatattggctaacaa 18142201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 14036024 - 14036282
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttc-caaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| |||| ||||| |||||||||| | |||||||||||| |||||||| || ||||||| |    
T  14036024 ctaatcacatcctttcgattcaaaatcaaaactagccgttcacaaaactagctgtttgctaactgcttggtcttatccgcaagacctgaatagcgcgtcg 14036123  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||| |||| | | ||||||||||| ||||||| |||| ||||| |||||||| | | |||||||||||||||||||  |||| ||||||| || |||||    
T  14036124 acaacttctttcatccgtcgaactagaaacaacgtctttgattcctgctgaagcacatttgtatttttcgatggatttctttctcaaagcttcgccccat 14036223  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
     ||| ||||||| | |||||||||||||||| ||||||| ||| |||||||||||||||    
T  14036224 ctttcggtcaaacccttgactgcattaaatgctcatattctcacaaatattggctaaca 14036282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18115379 - 18115633
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttcc-aaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||| ||| ||||||||||||||||||| ||| | |||  ||| |||| ||||||||||||| |||||||||||||||||| ||   |||||||| |    
T  18115379 ctaatcatatcctttcgattcaaaatcgaaactagtccttcataaaactagtcgtttgctaaccgcttggtcttatccacaagatct---gagcgcgtcg 18115475  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |  | |||| ||| ||| ||||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||     
T  18115476 atgacttcttttatccgacgaactaaaaacaccttcttcgattcctgctgaagtaaacttgcatttttcgatggattc-tttcacaaagctacgcccca- 18115573  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaa 259  Q
    ||||||||||||  ||||||||||||||||| |||||||| || ||||||||||||||||    
T  18115574 ttttaggtcaaacgtttgactgcattaaatggtcatatttccacaaatattggctaacaa 18115633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 44277823 - 44278079
Alignment:
Q  1 ctaatcacatcttttcgattcaaaa-tcgaaaat-agccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgtt 98  Q
    ||||||||||| ||||||||||||| |||||| | |||||||| ||| |||||||||||||||||| ||||||||||| || |||| | ||| ||||||     
T  44277823 ctaatcacatcctttcgattcaaaaatcgaaacttagccgttcgaaaactagccgtttgctaaccgcttggtcttatctaccagacttgaag-gcgcgtc 44277921  T
Q  99 gacaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggccca 198  Q
     |||  |||| | | |||||||||||||| || ||||||||||||  ||||| ||| |  |||||||  ||||||||| | |||||||||||||| ||||    
T  44277922 tacagcttctttcatccgtcgaactaaaa-cagcttcttcgattcccgctgaggtacatatgtatttgccgatggatt-tcttcacaaagctacgcccca 44278019  T
Q  199 tttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
     |||| ||||||| | |||||||||||||||||||||||||||| |||||||| ||||||    
T  44278020 attttgggtcaaacccttgactgcattaaatgatcatattttcacaaatattgactaaca 44278079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 14683302 - 14683903
Alignment:
Q  1 ctaatcacatcttttcgattcaaaa-tcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||| |||||| |||||||||  || |||||||||||||||||| ||||||||||||||||||     ||||||||| |    
T  14683302 ctaatcacatcctttcgattcaaaaatcgaaactagccgttcacaaactagccgtttgctaaccgcttggtcttatccacaaga-----agagcgcgtcg 14683396  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||| |||| ||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||  ||||||||||||||| |||||    
T  14683397 acaacttcttttatccgtcgaactaaaaacaacttcttcaattcctgctgaagtacacttgtatttttcgatggatttctttcacaaagctacgccccat 14683496  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgcc-cccagaaacgttatgttcgaactttctctctcg 298  Q
    |||||||||||||  |||||||||||||||||||||||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14683497 ttttaggtcaaatgcttgactgcattaaatgatcatattctcacaaaaattggctaacaaattgccgcccagaaacgttatgttcgaactttctctctcg 14683596  T
Q  299 a-tttaggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtaga 397  Q
    | |||||||||||||||||||||||||||| | | ||||||||| || ||||||||||||| ||||||||||||  || ||||||||||||||  |  ||    
T  14683597 attttaggagaaacttgacgtttctgaaaagttccgatgaagtgcaattcctcagcatgacctcattcttttgacgacgggatatttcaaaagacgcgga 14683696  T
Q  398 accgtcctcataaggacttagtgggccataccgtcattgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagcta 496  Q
    ||| || |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  14683697 accatcttcataaggacttagtgggtcataccgtcattgggaaccatcaaaaaacaactgttccatgcgatgattgacatctgtccagtatcaaaagcta 14683796  T
Q  497 tatatgaccctgagtcacacttttactcttacttcgtttct-tttagttatttttactcttctcaccatccccttcttctaccttacga-tccaaagtac 594  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||| || ||||||||||||||||||||||||||| | ||||||||    
T  14683797 tatatgaccctgagtcatacttttactcttacttcatttctctttagtcatttttactattttcaccatccccttcttctaccttacgatttcaaagtac 14683896  T
Q  595 tgttcat 601  Q
    |||||||    
T  14683897 tgttcat 14683903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 602
Target Start/End: Original strand, 7341622 - 7342221
Alignment:
Q  8 catcttttcgattcaaaatcgaaaatagccgttcca--aagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttgacaatt 105  Q
    |||| ||||||||||||||||||| |||||||| ||  || |||||||||||||||| | |||| |||||||   |||||| |||||||||| ||||| |    
T  7341622 catcctttcgattcaaaatcgaaactagccgtttcacaaaactagccgtttgctaactgcttggccttatccgtgagacctaaagagcgcgtcgacaact 7341721  T
Q  106 tctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccatttttag 205  Q
    ||| | | ||||||||||| ||||||  | |||||||| |||||||||| | ||||||||||||||||||||||||| |||| || || ||||| ||| |    
T  7341722 tctttcatccgtcgaactagaaacaatgtattcgattcctgctgaagtacatttgtatttttcgatggattcttttcccaaaacttcgccccatctttcg 7341821  T
Q  206 gtcaaatct-ttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc-agaaacgttatgttcgaactttctctctcgattt- 302  Q
    |||||| |  |||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||     
T  7341822 gtcaaaccccttgactgcattaaatgctcaaattctcacaaatattggctaacaaattgccccccagaaacgttatgtttgaactttctttctcgatttt 7341921  T
Q  303 aggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaa-ggtgtagaaccg 401  Q
    ||||||||||||||||||||||||| |   | ||||||| || ||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||    
T  7341922 aggagaaacttgacgtttctgaaaagt---ggtgaagtgcaattcctcagcatgacatcactcttttgacaacgggatatttcaaaaaggtgtagaaccg 7342018  T
Q  402 tcctcataaggacttagtgggccataccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatat 501  Q
    || |||||| |||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  7342019 tcttcataaagacttagtgggccataccgtcattgggaactatcaaaaacaaccgttccatgcgatgattgacatctgtccaatatcaaaagctatatat 7342118  T
Q  502 gaccctgagtcacacttttactcttacttcgtttct-tttagttatttttactcttctcaccatccccttcttctaccttacga-tccaaagtactgttc 599  Q
    |||||||||||| | ||||||| |||||||| ||||  ||||||  |||||||||| ||||||||||||||||||||||| ||| |||||| ||||||||    
T  7342119 gaccctgagtcatatttttacttttacttcgcttctccttagtttattttactcttttcaccatccccttcttctaccttgcgattccaaactactgttc 7342218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 13 - 605
Target Start/End: Complemental strand, 10792469 - 10791881
Alignment:
Q  13 tttcgattcaaaatcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttgacaatttctctta 112  Q
    |||||||||||| |||||| ||||||||| ||| |||||||||||||||||| ||||   |||||| || || |  |  |||||| ||||| |||  |||    
T  10792469 tttcgattcaaa-tcgaaactagccgttcgaaaactagccgtttgctaaccgcttggctctatccaaaa-acttggaaggcgcgtcgacaacttccttta 10792372  T
Q  113 cccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtat--ttttcgatggattcttttcacaaagctacggcccatttttaggtcaa 210  Q
    | |||||||| ||||||   ||||||||||| |||||||||||| || |||  ||||||||| ||||  | |||||||||||| | ||||||| ||||||    
T  10792371 ctcgtcgaac-aaaaacttattcttcgattcctgctgaagtagatttatatccttttcgatgaattccatccacaaagctacgcctcattttttggtcaa 10792273  T
Q  211 atctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc-agaaacgttatgttcgaactttctctc--tcgattt--agg 305  Q
    | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||  |||    
T  10792272 acccttgactgcattaaatgatcatattttcacaaatattggctaacaaattgccccccagaaacgttatgttcgaactttctcttcttcgattttcagg 10792173  T
Q  306 agaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtagaaccgtcct 405  Q
    |||||||||||||||||||| ||  |        ||||| |||| |||||||||||||||||||| |||  ||||||   ||||| |||||||||||| |    
T  10792172 agaaacttgacgtttctgaagaaaaca-------tgtaattccttagcatgacatcattcttttggaaatgggatatcaaaaaag-tgtagaaccgtcat 10792081  T
Q  406 cataaggacttagtgggccataccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgacc 505  Q
    ||||| ||||||||||||||||||| |||| |||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||     
T  10792080 cataaagacttagtgggccataccgccatttggaatcatcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagttatatatgact 10791981  T
Q  506 ctgagtcacacttttactcttacttcgtttcttttagttatttttactcttctcaccatccccttcttctaccttacgatccaaagtactgttcatctca 605  Q
      |||||| |||||| ||||||||| | | |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10791980 gcgagtcatacttttgctcttactttgctccttttagttacttttactcttttcaccatccccttcttctaccttacgatccaaaatactgttcatctca 10791881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 7396368 - 7396621
Alignment:
Q  8 catcttttcgattcaaaatcgaaaatagccgttcca--aagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttgacaatt 105  Q
    |||| ||||||||||||||||||| |||||||| ||  || |||||||||||||||| | |||| |||||||   |||||| |||||||||| ||||| |    
T  7396368 catcctttcgattcaaaatcgaaactagccgtttcacaaaactagccgtttgctaactgcttggccttatccgtgagacctaaagagcgcgtcgacaact 7396467  T
Q  106 tctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccatttttag 205  Q
    ||| | | ||||||||||| ||||||  | |||||||| |||||||||| | ||||||||||||||||||||||||| |||| || || ||||| ||| |    
T  7396468 tctttcatccgtcgaactagaaacaatgtattcgattcctgctgaagtacatttgtatttttcgatggattcttttcccaaaacttcgccccatctttcg 7396567  T
Q  206 gtcaaa-tctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    ||||||  | |||||||||||||||| ||||||| ||| |||||||||||||||    
T  7396568 gtcaaaccccttgactgcattaaatgctcatattctcacaaatattggctaaca 7396621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 10778951 - 10778707
Alignment:
Q  13 tttcgattcaaaatcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttgacaatttctctta 112  Q
    |||||||||||| |||||| ||||||||| ||| |||||||||||||||||| ||||   |||||| || || |  |  |||||| ||||| |||  |||    
T  10778951 tttcgattcaaa-tcgaaactagccgttcgaaaactagccgtttgctaaccgcttggctctatccaaaa-acttggaaggcgcgtcgacaacttccttta 10778854  T
Q  113 cccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtat--ttttcgatggattcttttcacaaagctacggcccatttttaggtcaa 210  Q
    | ||| |||| ||||||   ||||||||||| |||||||||||| || |||  ||||||||| ||||  | |||||||||||| | ||||||| ||||||    
T  10778853 ctcgttgaac-aaaaacttattcttcgattcctgctgaagtagatttatatccttttcgatgaattccatccacaaagctacgcctcattttttggtcaa 10778755  T
Q  211 atctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    | | |||||||||||||||||||||||||||| |||||||||||||||    
T  10778754 acccttgactgcattaaatgatcatattttcacaaatattggctaaca 10778707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 11887113 - 11886989
Alignment:
Q  133 ttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccatttttaggtcaaatctttgactgcattaaatgat 232  Q
    ||||||||||| |||||||||||| ||||||||| ||||| ||||  | |  ||||||||| ||||| ||||||||||| | ||||||||||||||||||    
T  11887113 ttcttcgattcctgctgaagtagatttgtatttt-cgatgaattccatccctaaagctacgccccatctttaggtcaaacccttgactgcattaaatgat 11887015  T
Q  233 catattttcataaatattggctaaca 258  Q
     ||||||||| |||||||||||||||    
T  11887014 tatattttcacaaatattggctaaca 11886989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 13299618 - 13299873
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttga 100  Q
    ||||||| |||  |||||||||||||||||| ||||||||  ||| |||||||||||||||| | ||| ||||||||| || | || ||| |||| | ||    
T  13299618 ctaatcatatccgttcgattcaaaatcgaaactagccgtttgaaa-ctagccgtttgctaactgcttgatcttatccaaaaaatctgaag-gcgcttcga 13299715  T
Q  101 caatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaag-tagacttgtatttttcgatggattcttttcacaaagctacggccca- 198  Q
     || |||  ||| || ||||||||||| |  ||||||||||||  ||| ||| || || | |||||||||||||||||||| |||||||||| | || |     
T  13299716 taacttcctttatccatcgaactaaaa-cggcttcttcgattcccgctaaaggtatacatatatttttcgatggattcttt-cacaaagctaagtccaac 13299813  T
Q  199 tttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    ||||||||||||| | ||||||||||||||||||  |||| ||| |||||| ||||||||    
T  13299814 tttttaggtcaaacccttgactgcattaaatgatactattctcacaaatatcggctaaca 13299873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 13310276 - 13310531
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttga 100  Q
    ||||||| |||  |||||||||||||||||| ||||||||  ||| |||||||||||||||| | ||| ||||||||| || | || ||| |||| | ||    
T  13310276 ctaatcatatccgttcgattcaaaatcgaaactagccgtttgaaa-ctagccgtttgctaactgcttgatcttatccaaaaaatctgaag-gcgcttcga 13310373  T
Q  101 caatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaag-tagacttgtatttttcgatggattcttttcacaaagctacggccca- 198  Q
     || |||  ||| || ||||||||||| |  ||||||||||||  ||| ||| || || | |||||||||||||||||||| |||||||||| | || |     
T  13310374 taacttcctttatccatcgaactaaaa-cggcttcttcgattcccgctaaaggtatacatatatttttcgatggattcttt-cacaaagctaagtccaac 13310471  T
Q  199 tttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    ||||||||||||| | ||||| ||||||||||||  |||| ||| |||||| ||||||||    
T  13310472 tttttaggtcaaacccttgacagcattaaatgatactattctcacaaatatcggctaaca 13310531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 433 - 585
Target Start/End: Complemental strand, 10170693 - 10170540
Alignment:
Q  433 attgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttacttc 531  Q
    ||||||||| || ||||||||||||||||| |||||| ||||||| |||| || |||||| ||||||||| ||||| ||||| ||||||||||| ||||     
T  10170693 attgggaactatcaaaaaacaactgttccatgcgatggttgacatttgtcaaacatcaaaggctatatataaccctaagtcatacttttactctcacttt 10170594  T
Q  532 g-tttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
    |  | ||||||| ||||||||||||| ||||| |  ||| ||||| |||||||||    
T  10170593 gcctccttttag-tatttttactcttttcaccgtatcctccttcttccttacgat 10170540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 327
Target Start/End: Complemental strand, 10170919 - 10170807
Alignment:
Q  213 ctttgactgcattaaatgatcatattttcataaatattggctaacaaattgc-ccccagaaacgttatgttcgaactttctctctcgatttaggagaaac 311  Q
    ||||||||||||||||||||   ||||||| |||||| |||||||||||||| ||||||||||||||||||  |||  ||| | |||| | | |||||||    
T  10170919 ctttgactgcattaaatgatagcattttcacaaatatcggctaacaaattgccccccagaaacgttatgtttaaac--tctttttcga-tcaagagaaac 10170823  T
Q  312 ttgacgtttctgaaaa 327  Q
    ||||||||||||||||    
T  10170822 ttgacgtttctgaaaa 10170807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 12021819 - 12021905
Alignment:
Q  204 aggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgcccc--cagaaacgttatgttcgaact 288  Q
    ||||||| ||||||||  |||||||||||    |||| | |||||||||||||||| |||||||  |||||||||||||||||||||    
T  12021819 aggtcaattctttgaccacattaaatgataccctttttaaaaatattggctaacaagttgcccccccagaaacgttatgttcgaact 12021905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 10139552 - 10139507
Alignment:
Q  213 ctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    ||||||||||||||||||||   ||||||| |||||||||||||||    
T  10139552 ctttgactgcattaaatgatagcattttcacaaatattggctaaca 10139507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 605
Target Start/End: Original strand, 41368828 - 41369412
Alignment:
Q  14 ttcgattcaaaatcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttgacaatttctcttac 113  Q
    |||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||| |||||||| || || |  |  |||||| ||||| |||  ||||    
T  41368828 ttcgattcaaaatcgagactagccgttcgaaa-ctagccgtttgctaaccgtttggccttatccaaaaaacttggaaggcgcgtcgacaacttcctttac 41368926  T
Q  114 ccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccatttttaggtcaaatc 213  Q
    | ||||||| |||| | ||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |    
T  41368927 ctgtcgaacaaaaacctact-cttcgattcatgctgaagtagatttgtatttttcgatggattctttccacaaagctacgccccatttttaggtcaaacc 41369025  T
Q  214 tttgactgcattaaatgatcatattttcataaatattggctaacaaattgcccccagaaacgttatgttcgaactttctctctcgattt--aggagaaac 311  Q
     |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||  |||||||||    
T  41369026 cttgactgcattaaatgatcatattttcacaaatattggctaacaaattgcccccagaaacgttatgttcgaactttcttcttcgatttttaggagaaac 41369125  T
Q  312 ttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtagaaccgtcctcataag 411  Q
    ||||||||||| || ||  |        ||||| || ||||||||||||||||||||||  ||| ||||||||||| ||||||||||||||| ||||||     
T  41369126 ttgacgtttctaaagaaaaca-------tgtaactcgtcagcatgacatcattcttttggcaacgggatatttcaagaggtgtagaaccgtcatcataaa 41369218  T
Q  412 gacttagtgggccataccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagt 511  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||    
T  41369219 gacttagtgggccataccgtcgttgggaatcataaaaaacaactgttccacgcgatgattgacatctgtccagtatcaaaagctatatatgactatgagt 41369318  T
Q  512 cacacttttactcttacttcgtttcttttagttatttttactcttctcaccatccccttcttctaccttacgatccaaagtactgttcatctca 605  Q
    || |||||| |||||||||| |||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41369319 catacttttgctcttacttcatttcctttagttacttttactcttttcaccatccccttcttctaccttacgatccaaagtactgttcatctca 41369412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 22086379 - 22085793
Alignment:
Q  1 ctaatcacatcttttcgattcaaaa-tcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||| |||||| ||||||||| | | |||||||||||||||||| ||||||||||||||||||||| ||| || |||      
T  22086379 ctaatcacatcctttcgattcaaaaatcgaaactagccgttcgagaactagccgtttgctaaccgcttggtcttatccacaagacctgaag-gctcgtct 22086281  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||  |||| | | |||||||||||||| || |||||||||||| | |||| ||| || ||||||| |||||||||| | |||||||||||||| || ||    
T  22086280 acagcttctttcatccgtcgaactaaaa-cagcttcttcgattcctactgaggtacacatgtatttgtcgatggatt-tcttcacaaagctacgccctat 22086183  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc-agaaacgttatgttcgaactttctctctcg 298  Q
    |||| ||||||| | |||||||||||||||||||||||| ||| |||||||| |||||||||||||||| | |||||||||||| |||||| |||| |||    
T  22086182 ttttgggtcaaacccttgactgcattaaatgatcatattctcacaaatattgactaacaaattgccccccataaacgttatgtttgaactt-ctctttcg 22086084  T
Q  299 atttaggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtagaa 398  Q
    ||  |||||||||||||||||| |||||| | | ||| |||| | | ||||||||||||||||  |||||| | ||| |||||||| |||||||  | ||    
T  22086083 atc-aggagaaacttgacgtttttgaaaatttccgataaagtatgactcctcagcatgacatcgctcttttaacaacgggatatttgaaaaggttcaaaa 22085985  T
Q  399 ccgtcctcataaggacttagtgggccataccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctata 498  Q
    ||| | |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  22085984 ccgccttcatcaggacttagtgggccatgccgtcattgggaaccatcaaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaagctata 22085885  T
Q  499 tatgaccctgagtcacacttttactcttacttcgtttct-tttagttatttttactcttctcaccatccccttcttctaccttacgatccaaa 590  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||||||||| |||||||| ||||    
T  22085884 tatgaccctgagtcatacttttactcttactttgtttctctttagt-atttttactcttttcaccatccccttcttctaacttacgattcaaa 22085793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 41383735 - 41383977
Alignment:
Q  14 ttcgattcaaaatcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttgacaatttctcttac 113  Q
    |||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||| |||||||| || || |  |  |||||| ||||| |||  ||||    
T  41383735 ttcgattcaaaatcgagactagccgttcaaaa-ctagccgtttgctaaccgtttggccttatccaaaaaacttggaaggcgcgtcgacaacttcctttac 41383833  T
Q  114 ccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccatttttaggtcaaatc 213  Q
    | ||||||| |||| | ||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |    
T  41383834 ctgtcgaacaaaaacctact-cttcgattcctgctgaagtagatttgtatttttcgatggattctttccacaaagctacgccccatttttaggtcaaacc 41383932  T
Q  214 tttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
     |||||||||||||||||||||||||||| |||||||||||||||    
T  41383933 cttgactgcattaaatgatcatattttcacaaatattggctaaca 41383977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 21310502 - 21310450
Alignment:
Q  237 ttttcataaatattggctaacaaattgc-ccccagaaacgttatgttcgaact 288  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  21310502 ttttcacaaatattggctaacaaattgccccccataaacgttatgttcgaact 21310450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 562
Target Start/End: Original strand, 22795096 - 22795187
Alignment:
Q  471 tgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttacttcgtttcttttagttatttttactcttctcacc 562  Q
    ||||||||||| ||||||||| ||||||||| ||| || |||| ||||||||| | |||| |  ||||||  | ||||||||||||||||||    
T  22795096 tgacatctgtcaaatatcaaaggctatatataaccttgggtcatacttttactttcactttgcctctttttatcatttttactcttctcacc 22795187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 22685042 - 22685087
Alignment:
Q  244 aaatattggctaacaaattg-cccccagaaacgttatgttcgaact 288  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  22685042 aaatattggctaacaaattgccccccagaaacgttacgttcgaact 22685087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 27561699 - 27561642
Alignment:
Q  201 tttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    ||||||||||| | ||||||||||||||||||   ||||||| |||||| ||||||||    
T  27561699 tttaggtcaaacccttgactgcattaaatgatagcattttcacaaatatcggctaaca 27561642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 603
Target Start/End: Complemental strand, 1735271 - 1734689
Alignment:
Q  14 ttcgattcaaaatcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttgacaatttctcttac 113  Q
    |||||||||||||||| | ||||||||| ||| |||||||||||||||||| |||| |||||||| || || |  |  |||||| ||||| |||  ||||    
T  1735271 ttcgattcaaaatcgagactagccgttcgaaa-ctagccgtttgctaaccgcttggccttatccaaaaaacttggaaggcgcgtcgacaacttcctttac 1735173  T
Q  114 ccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccatttttaggtcaaatc 213  Q
      ||||||| |||| | ||| ||||||||| | |||||||||| ||||||||||||||||||||| | ||||||||||||  |||||||| ||||||| |    
T  1735172 ttgtcgaacaaaaacccact-cttcgattccttctgaagtagatttgtatttttcgatggattctgtccacaaagctacgctccattttttggtcaaacc 1735074  T
Q  214 tttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc-agaaacgttatgttcgaactttctctctcgattt-aggagaaac 311  Q
     |||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||   || |||| |||||||||    
T  1735073 cttgactgcattaaatgatcatatttttacaaatattggctaacaaattgccccccagaaacgttatgttcgaactttcttcttcaattttaggagaaac 1734974  T
Q  312 ttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtagaaccgtcctcataag 411  Q
    |||||||||||||| ||  |        ||| | |||||||||||||||||||||||||  ||||||||||||||| | ||||||||||||| ||||||     
T  1734973 ttgacgtttctgaagaaaaca-------tgtgactcctcagcatgacatcattcttttggcaacaggatatttcaagaagtgtagaaccgtcatcataaa 1734881  T
Q  412 gacttagtgggccataccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagt 511  Q
    ||||||||||||||||| ||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1734880 gacttagtgggccatactgtcgttgggaatcatcaaaaacaactattccacgcgatgattgacatctgtccaatatcaaaagctatatatgactctgagt 1734781  T
Q  512 cacacttttactcttacttcgtttcttttagttatttttactcttctcaccatccccttcttctaccttacgatccaaagtactgttcatct 603  Q
    || |||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  1734780 catacttttgctcttacttcgtttcttttagttacttttactcttttcaccatccccttcttctactttacgatccaaagtactgttcatct 1734689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 16668111 - 16668369
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttc-caaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||| | |||||||||||| |||||||| || ||||||| |    
T  16668111 ctaatcacatcgtttcgattcaaaatcgaaactagccgttcacaaaactagccgtttgctaactgcttggtcttatccgcaagacctgaatagcgcgtcg 16668210  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||| |||| | | ||||||||||| ||||||| | |||||||| |||||||| | | |||||||||||||||||||  |||| ||||||| || |||||    
T  16668211 acaacttctttcatccgtcgaactagaaacaacgttttcgattcctgctgaagcacatttgtatttttcgatggatttctttctcaaagcttcgccccat 16668310  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
     ||||||||||| | |||||||||||||||| ||||||| ||| |||||||||||||||    
T  16668311 ctttaggtcaaacccttgactgcattaaatgctcatattctcacaaatattggctaaca 16668369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 17426253 - 17426511
Alignment:
Q  1 ctaatcacatcttttcgattcaaaa-tcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||| |||||  ||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||| ||||||      
T  17426253 ctaatcacatcctttcgattcaaaaatcgaatctagccgttcgaaaactagccgtttgctaaccgcttggtcttatccacaagacctgaag-gcgcgtct 17426351  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||  |||| | | |||||||||||||| || |||||||||||| |||||| ||| || ||||||| |||||| ||| | |||||||||||||| || ||    
T  17426352 acagcttctttcatccgtcgaactaaaa-cagcttcttcgattcctgctgaggtacacatgtatttgtcgatgaatt-tcttcacaaagctacgccctat 17426449  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaat 261  Q
    |||| ||||||| | |||| ||||||||||||||||||| ||| |||||||| |||||||||    
T  17426450 ttttgggtcaaacccttgagtgcattaaatgatcatattctcacaaatattgactaacaaat 17426511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 20193311 - 20193567
Alignment:
Q  1 ctaatcacatcttttcgattcaaaa-tcgaaaat-agccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgtt 98  Q
    ||||||||||| ||||||||||||| |||||| | |||||||| ||| |||||||||||||||||| ||||||||||| || |||| | ||| ||||||     
T  20193311 ctaatcacatcctttcgattcaaaaatcgaaacttagccgttcgaaaactagccgtttgctaaccgcttggtcttatctaccagacttgaag-gcgcgtc 20193409  T
Q  99 gacaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggccca 198  Q
     |||  |||| | | |||||||||||||| || ||||||||||||  ||||| ||| |  |||||||  ||||||||| | |||||||||||||| ||||    
T  20193410 tacagcttctttcatccgtcgaactaaaa-cagcttcttcgattcccgctgaggtacatatgtatttgccgatggatt-tcttcacaaagctacgcccca 20193507  T
Q  199 tttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
     |||| ||||||| | |||||||||||||||||||||||||||| |||||||| ||||||    
T  20193508 attttgggtcaaacccttgactgcattaaatgatcatattttcacaaatattgactaaca 20193567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 433 - 585
Target Start/End: Original strand, 22333983 - 22334135
Alignment:
Q  433 attgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttacttcg 532  Q
    |||||||||||  ||||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||| ||| || |||| ||||||||| | |||| |    
T  22333983 attgggaaccaccaaaaacaaccgttccacgcgattgttgacatctgtcaaatatcaaaggctatatataaccttgggtcatacttttactttcactttg 22334082  T
Q  533 tttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
      || |||  | |||||||||||||||||| |  ||| ||||| |||||||||    
T  22334083 cctccttttatcatttttactcttctcaccgtatcctccttcttccttacgat 22334135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 22352348 - 22352405
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaa 259  Q
    |||||||||| |||||||| |||||||||||    |||||| ||||||||||||||||    
T  22352348 ttaggtcaaacctttgactacattaaatgatacccttttcacaaatattggctaacaa 22352405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 25389314 - 25389370
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||| | ||||||| ||||||||||    ||||||||||||||||||||||    
T  25389314 ttaggtcaaacccttgactgtattaaatgatacccttttcataaatattggctaaca 25389370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 590
Target Start/End: Original strand, 46423 - 47010
Alignment:
Q  1 ctaatcacatcttttcgattcaaaa-tcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||| || ||| ||||||||| ||| |||||||||||||||||  ||||||||||||||||||||| ||| ||||||      
T  46423 ctaatcacatcctttcgattcaaaaatcaaaactagccgttcgaaaactagccgtttgctaaccacttggtcttatccacaagacctgaag-gcgcgtct 46521  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||  |||| | | |||||||||||||| || |||||||||||| |||||| ||| || ||||||| |||||||||| | |||||||||||||| || ||    
T  46522 acagcttctttcatccgtcgaactaaaa-cagcttcttcgattcctgctgaggtacacatgtatttgtcgatggatt-tcttcacaaagctacgccctat 46619  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc--agaaacgttatgttcgaactttctctctc 297  Q
    |||| ||||||| | |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||  |||||||||||||| |||||| |||| ||    
T  46620 ttttgggtcaaacccttgactgcattaaatgatcatattctcacaaatattgactaacaaattgcccccccagaaacgttatgtttgaactt-ctctttc 46718  T
Q  298 gatttaggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtaga 397  Q
    |||  ||||||||||||||||||||||||| | | ||| |||| | | ||||||||||||||||| |||||| |  || |||||||| |||||||  | |    
T  46719 gatc-aggagaaacttgacgtttctgaaaatttccgataaagtatgactcctcagcatgacatcactcttttaactacgggatatttgaaaaggttcaaa 46817  T
Q  398 accgtcctcataaggacttagtgggccataccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctat 497  Q
    |||| | |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  46818 accgccttcatcaggacttagtgggccatgccgtcattgggaaccatcaaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaagctat 46917  T
Q  498 atatgaccctgagtcacacttttactcttacttcgtttct-tttagttatttttactcttctcaccatccccttcttctaccttacgatccaaa 590  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||| ||||    
T  46918 atatgaccctgagtcatacttttactcttactttgtttctctttag-tatttttactcttttcaccatccccttcttctaacttacgattcaaa 47010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 590
Target Start/End: Original strand, 51061 - 51648
Alignment:
Q  1 ctaatcacatcttttcgattcaaaa-tcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||| || ||| ||||||||| ||| |||||||||||||||||  ||||||||||||||||||||| ||| ||||||      
T  51061 ctaatcacatcctttcgattcaaaaatcaaaactagccgttcgaaaactagccgtttgctaaccacttggtcttatccacaagacctgaag-gcgcgtct 51159  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||  |||| | | |||||||||||||| || |||||||||||| |||||| ||| || ||||||| |||||||||| | |||||||||||||| || ||    
T  51160 acagcttctttcatccgtcgaactaaaa-cagcttcttcgattcctgctgaggtacacatgtatttgtcgatggatt-tcttcacaaagctacgccctat 51257  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc--agaaacgttatgttcgaactttctctctc 297  Q
    |||| ||||||| | |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||  |||||||||||||| |||||| |||| ||    
T  51258 ttttgggtcaaacccttgactgcattaaatgatcatattctcacaaatattgactaacaaattgcccccccagaaacgttatgtttgaactt-ctctttc 51356  T
Q  298 gatttaggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtaga 397  Q
    |||  ||||||||||||||||||||||||| | | ||| |||| | | ||||||||||||||||| |||||| |  || |||||||| |||||||  | |    
T  51357 gatc-aggagaaacttgacgtttctgaaaatttccgataaagtatgactcctcagcatgacatcactcttttaactacgggatatttgaaaaggttcaaa 51455  T
Q  398 accgtcctcataaggacttagtgggccataccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctat 497  Q
    |||| | |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  51456 accgccttcatcaggacttagtgggccatgccgtcattgggaaccatcaaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaagctat 51555  T
Q  498 atatgaccctgagtcacacttttactcttacttcgtttct-tttagttatttttactcttctcaccatccccttcttctaccttacgatccaaa 590  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||| || |||||||||| ||||||||||||||||||| |||||||| ||||    
T  51556 atatgaccctgagtcatacttttactcttactttgtttctctttag-taattttactcttttcaccatccccttcttctaacttacgattcaaa 51648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 24954320 - 24953918
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttc-caaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||| | |||| ||||| |  ||||||| |||||||||| |    
T  24954320 ctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaaactagccgtttgctaactgcttggccttatacgtaagacctaaagagcgcgtcg 24954221  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||| |||| | | ||||||||||| ||||||| | |||||||| |||||||| | | ||||||||||||||||||| ||||| |||| || || |||||    
T  24954220 acaacttctttcatccgtcgaactagaaacaacgtattcgattcctgctgaagcacatttgtatttttcgatggatttttttctcaaaacttcgccccat 24954121  T
Q  200 ttttaggtc-aaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattg-------cccccagaaacgttatgttcgaactttc 291  Q
     ||| |||| ||| | |||||||||||||||| ||||||| ||| ||||||||||||||||||||       |||||| |||||||||||||||||||||    
T  24954120 ctttcggtcaaaacccttgactgcattaaatgctcatattctcacaaatattggctaacaaattgccccccccccccataaacgttatgttcgaactttc 24954021  T
Q  292 tctctcga-tttaggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaag 390  Q
    | |||||| ||||||||||| |||||||||||||||| | ||||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||||    
T  24954020 tttctcgattttaggagaaaattgacgtttctgaaaagttctgatgaagtgcaattcctcagcatgacatcattcttttgacaacgggatatttcaaaag 24953921  T
Q  391 gtg 393  Q
    |||    
T  24953920 gtg 24953918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 394 - 601
Target Start/End: Complemental strand, 24950720 - 24950510
Alignment:
Q  394 tagaaccgtcctcataaggacttagtgggccataccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaag 493  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  24950720 tagaaccgtcttcctaaagacttagtgggccataccgtcattgggaaccatcaaaaacaaccgttccatgcgatgattgacatctgtccaatatcaaaag 24950621  T
Q  494 ctatatatgaccctgagtcacacttttactcttacttcgtttct-tttag-ttatttttactcttctcaccatccccttcttctaccttacga-tccaaa 590  Q
    |||||||||||||||||||| | |||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  24950620 ctatatatgaccctgagtcatatttttactcttacttcgtttctccttagtttatttttactcttttcaccatccccttcttctaccttacgatttcaaa 24950521  T
Q  591 gtactgttcat 601  Q
     ||||||||||    
T  24950520 atactgttcat 24950510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 200 - 581
Target Start/End: Original strand, 23190561 - 23190941
Alignment:
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc-agaaacgttatgttcgaactttctctctcg 298  Q
    |||||||||||| | |||||  |||||||||||  |||||||| |||||| |||||||||||||||||| |||||||||||||| |||||  |||| |||    
T  23190561 ttttaggtcaaacccttgaccacattaaatgatagtattttcacaaatatcggctaacaaattgccccccagaaacgttatgtttgaact--ctctttcg 23190658  T
Q  299 atttaggagaaactt-gacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtaga 397  Q
    ||| || |||||||| ||| |||||||||| | | ||| |||||| | ||||| || |||||||| |||||||||||  |||||||||||||| | || |    
T  23190659 attaag-agaaactttgacctttctgaaaatttc-gataaagtgtgactcctctgcgtgacatcactcttttgaaaaggggatatttcaaaagtttta-a 23190755  T
Q  398 accgtcctcataaggacttagtgggccatacc-gtcattgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagct 495  Q
    ||||||  ||| ||  |||||||||||||    || |||||||||||  ||||||||||||||||| ||||||||||||||||||| || |||||| |||    
T  23190756 accgtctccatcagagcttagtgggccatgtttgttattgggaaccaacaaaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggct 23190855  T
Q  496 atatatgaccctgagtcacacttttactcttacttcg-tttcttttagttatttttactcttctcaccatccccttcttctacctta 581  Q
    |||||||||| | || || ||||||||||| |||| |  | ||||||| ||||||||||||| |||||||| |||||||||||||||    
T  23190856 atatatgaccttaagccatacttttactctcactttgcctccttttag-tatttttactcttttcaccatctccttcttctacctta 23190941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 200 - 581
Target Start/End: Original strand, 23611816 - 23612196
Alignment:
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc-agaaacgttatgttcgaactttctctctcg 298  Q
    |||||||||||| | |||||  |||||||||||  |||||||| |||||| |||||||||||||||||| |||||||||||||| |||||  |||| |||    
T  23611816 ttttaggtcaaacccttgaccacattaaatgatagtattttcacaaatatcggctaacaaattgccccccagaaacgttatgtttgaact--ctctttcg 23611913  T
Q  299 atttaggagaaactt-gacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtaga 397  Q
    ||| || |||||||| ||| |||||||||| | | ||| |||||| | ||||| || |||||||| |||||||||||  |||||||||||||| | || |    
T  23611914 attaag-agaaactttgacctttctgaaaatttc-gataaagtgtgactcctctgcgtgacatcactcttttgaaaaggggatatttcaaaagtttta-a 23612010  T
Q  398 accgtcctcataaggacttagtgggccatacc-gtcattgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagct 495  Q
    ||||||  ||| ||  |||||||||||||    || |||||||||||  ||||||||||||||||| ||||||||||||||||||| || |||||| |||    
T  23612011 accgtctccatcagagcttagtgggccatgtttgttattgggaaccaacaaaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggct 23612110  T
Q  496 atatatgaccctgagtcacacttttactcttacttcg-tttcttttagttatttttactcttctcaccatccccttcttctacctta 581  Q
    |||||||||| | || || ||||||||||| |||| |  | ||||||| ||||||||||||| |||||||| |||||||||||||||    
T  23612111 atatatgaccttaagccatacttttactctcactttgcctccttttag-tatttttactcttttcaccatctccttcttctacctta 23612196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 200 - 585
Target Start/End: Complemental strand, 22648339 - 22647955
Alignment:
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc--agaaacgttatgttcgaactttctctctc 297  Q
    |||||||||||| | |||||  |||||||||||  |||||||| |||||| || |||||||||||||||  ||||| |||||||| |||||  |||| ||    
T  22648339 ttttaggtcaaacccttgaccacattaaatgatagtattttcacaaatatcgggtaacaaattgcccccccagaaatgttatgtttgaact--ctctttc 22648242  T
Q  298 gatttaggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtaga 397  Q
    |||| || |||||||||||||||||||||| | | ||| |||||| | |||||  | |||||||| |||||||||||  ||| |||||||||| | || |    
T  22648241 gattaag-agaaacttgacgtttctgaaaatttc-gataaagtgtgactcctctacgtgacatcactcttttgaaaatgggacatttcaaaagtttta-a 22648145  T
Q  398 accgtcctcataaggacttagtgggccatacc-gtcattgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagct 495  Q
    | ||||  ||| ||  |||||||||||||    || ||||||||| || ||||||||| |||| || ||||||||||||||||||| || |||||| |||    
T  22648144 atcgtctccattagagcttagtgggccatgtttgttattgggaacaatcaaaaaacaaatgttacatgcgatgattgacatctgtcaaacatcaaaggct 22648045  T
Q  496 atatatgaccctgagtcacacttttactcttacttcg-tttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
    |||||||||| | || || ||||||||||| |||| |  | ||||||| ||||||||||||| | |||||| |||||||||||||||||||    
T  22648044 atatatgaccttaagccatacttttactctcactttgcctccttttag-tatttttactctttttaccatctccttcttctaccttacgat 22647955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 200 - 585
Target Start/End: Original strand, 23615464 - 23615855
Alignment:
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc-agaaacgttatgttcgaactttctctctcg 298  Q
    ||||| |||||| | |||||  |||||||||||  |||||||| |||||| || ||||||||||||||| |||||||||||||| |||||  || | |||    
T  23615464 ttttaagtcaaacccttgaccacattaaatgatagtattttcacaaatatcggttaacaaattgccccccagaaacgttatgtttgaact--ctttttcg 23615561  T
Q  299 atttaggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtag-- 396  Q
    ||  || |||||||||||||||||||||| | | ||| |||||| | ||||| || ||||| || |||||||||||  ||| |||||||||| | ||       
T  23615562 atcaag-agaaacttgacgtttctgaaaatttc-gataaagtgtgactcctctgcgtgacaccactcttttgaaaaggggacatttcaaaagttttaact 23615659  T
Q  397 -----aaccgtcctcataaggacttagtgggccatacc-gtcattgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatca 489  Q
         |||||||  ||| ||  |||||||||||||    || |||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||    
T  23615660 ttttaaaccgtctccatcagagcttagtgggccatgtttgttattgggaaccatcaaaaaacaactgttccatgcgatgattgacatctgtcaaacatca 23615759  T
Q  490 aaagctatatatgaccctgagtcacacttttactcttacttcg-tttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
    || ||||||||||||| |  | || ||||||||||| |||| |  | ||||||| ||||||||||||| |||||||| ||||||||| |||||||||    
T  23615760 aaggctatatatgaccttaggccatacttttactctcactttgcctccttttag-tatttttactcttttcaccatctccttcttcttccttacgat 23615855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 24967509 - 24967339
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttc-caaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||| | |||| ||||| |  ||||||| |||||||||| |    
T  24967509 ctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaaactagccgtttgctaactgcttggccttatacgtaagacctaaagagcgcgtcg 24967410  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcga 170  Q
    |||| |||| | | ||||||||||| ||||||| | |||||||| |||||||| | | |||||||||||||    
T  24967409 acaacttctttcatccgtcgaactagaaacaacgtattcgattcctgctgaagcacatttgtatttttcga 24967339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 24967303 - 24967260
Alignment:
Q  215 ttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||    
T  24967303 ttgactgcattaaatgctcatattctcacaaatattggctaaca 24967260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 6e-82; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 18108670 - 18108417
Alignment:
Q  1 ctaatcacatcttttcgattcaaaa-tcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    ||||||||||| ||||||||||||| |||||| |||||||||  || |||||||||||||||||| ||||||||||||||||||     ||||||||| |    
T  18108670 ctaatcacatcctttcgattcaaaaatcgaaactagccgttcacaaactagccgtttgctaaccgcttggtcttatccacaaga-----agagcgcgtcg 18108576  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||| |||| ||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||  ||||||||||||||| |||||    
T  18108575 acaacttcttttatccgtcgaactaaaaacaacttcttcgattcctgctgaagtacacttgtatttttcgatggatttctttcacaaagctacgccccat 18108476  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||    
T  18108475 ttttaggtcaaacccttgactgcattaaatgatcatattctcacaaatattggctaaca 18108417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 433 - 585
Target Start/End: Original strand, 13277798 - 13277952
Alignment:
Q  433 attgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctga-gtcacacttttactcttactt 530  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||| || |||||| ||||||||||||| | | |||| ||||||||||| ||||    
T  13277798 attgggaaccatcaaaaaacaactgttccacgcgatggttgacatctgtcaaacatcaaaggctatatatgacctttaggtcatacttttactctcactt 13277897  T
Q  531 cg-tttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
     | || ||||||| ||||||||||||| ||||| |  ||| ||||| |||||||||    
T  13277898 tgcttccttttag-tatttttactcttttcaccgtatcctccttcttccttacgat 13277952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 203 - 329
Target Start/End: Original strand, 14714467 - 14714592
Alignment:
Q  203 taggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccc-ccagaaacgttatgttcgaactttctctctcgatt 301  Q
    ||||||||| ||||||||||||||||||||  | |||||| ||||||||||||||||||||||| |||||||||||||||| |||| |  ||| |||| |    
T  14714467 taggtcaaacctttgactgcattaaatgatactcttttcacaaatattggctaacaaattgcccgccagaaacgttatgtttgaac-tcgtctttcga-t 14714564  T
Q  302 taggagaaacttgacgtttctgaaaaat 329  Q
     | |||||||||||||||||||||||||    
T  14714565 caagagaaacttgacgtttctgaaaaat 14714592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 201 - 326
Target Start/End: Original strand, 13277556 - 13277679
Alignment:
Q  201 tttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattg-cccccagaaacgttatgttcgaactttctctctcga 299  Q
    |||| |||||| | ||||||||||||||||||  |||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||  ||| | ||||    
T  13277556 tttatgtcaaacccttgactgcattaaatgatagtattttcacaaatatcggctaacaaattgccccccagaaacgttatgtttgaac--tctttttcga 13277653  T
Q  300 tttaggagaaacttgacgtttctgaaa 326  Q
     | | ||||||||||||||||||||||    
T  13277654 -tcaagagaaacttgacgtttctgaaa 13277679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 14557241 - 14557309
Alignment:
Q  215 ttgactgcattaaatgatcatattttcataaatattggctaacaaattg-cccccagaaacgttatgtt 282  Q
    ||||||||||||||||||  | |||||| |||||| ||||||||||||| |||||||||||||||||||    
T  14557241 ttgactgcattaaatgatagtgttttcacaaatatcggctaacaaattgccccccagaaacgttatgtt 14557309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 505
Target Start/End: Original strand, 14557465 - 14557537
Alignment:
Q  433 attgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgacc 505  Q
    |||||||||  | |||||||||||||||| |||||||||||||||||||    |||||| |||||||||||||    
T  14557465 attgggaactgtcaaaaacaactgttccatgcgatgattgacatctgtcaggcatcaaaggctatatatgacc 14557537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 585
Target Start/End: Original strand, 14714709 - 14714865
Alignment:
Q  430 gtcattgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttac 528  Q
    ||||||||||||||| |||||||||| |||||| |||||   |||||| ||||  ||||| || || |||||| ||| || |||| ||||||||| | ||    
T  14714709 gtcattgggaaccattaaaaaacaaccgttccatgcgattgctgacatatgtcacatatccaaggcaatatataaccttgggtcatacttttactttcac 14714808  T
Q  529 ttcgtttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
    || |  || |||  | |||||||||||||||||| |  ||| ||||| |||||||||    
T  14714809 tttgcctcattttatcatttttactcttctcaccgtatcctccttcttccttacgat 14714865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 14776147 - 14776202
Alignment:
Q  203 taggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    ||||||||  ||||||||||||||||||||  | |||||| |||||||||||||||    
T  14776147 taggtcaaccctttgactgcattaaatgatactcttttcacaaatattggctaaca 14776202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 13292934 - 13292992
Alignment:
Q  201 tttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaa 259  Q
    ||||||||||| | ||||||||||||||||||  | |||||| |||||| |||||||||    
T  13292934 tttaggtcaaacccttgactgcattaaatgatagtcttttcacaaatatcggctaacaa 13292992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 305 - 590
Target Start/End: Complemental strand, 79474 - 79190
Alignment:
Q  305 gagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtagaaccgtcc 404  Q
    |||||||||||  |||||||||| |   ||| |||||| | |||||||||||||||||||||||||| ||  | |||||||||||||| |  |||||||     
T  79474 gagaaacttgaaatttctgaaaattttcgataaagtgtgactcctcagcatgacatcattcttttgacaaaggaatatttcaaaaggttttaaaccgtct 79375  T
Q  405 tcataaggacttagtgggccataccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgac 504  Q
    |||| || ||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  79374 tcatcagaacttagtgggccatgttgtcattgggaaccataaaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaggctatatatgac 79275  T
Q  505 cctgagtcacacttttactcttacttcgtttcttttagttatttttactcttctcaccatccccttcttctaccttacgatccaaa 590  Q
    ||| || || |||||||||||||||| |  || ||||| | ||||||||||| |||||||| ||||||||||||||||||| ||||    
T  79274 cctaagccatacttttactcttactttgcctcctttag-tgtttttactcttttcaccatctccttcttctaccttacgattcaaa 79190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 164 - 590
Target Start/End: Complemental strand, 4347 - 3924
Alignment:
Q  164 ttttcgatggattcttttcacaaagctacggccca-tttttaggtcaaatct-ttgactgcattaaatgatcatattttcataaatattggctaacaaat 261  Q
    ||||||||||||||||| |||||||||| | || | ||||||||||||| |  ||||||||||||||||||  |||| ||| |||||| |||||||||||    
T  4347 ttttcgatggattcttt-cacaaagctaagtccaactttttaggtcaaaacccttgactgcattaaatgatactattctcacaaatatcggctaacaaat 4249  T
Q  262 tgccccc-agaaacgttatgttcgaactttctctctcgatttaggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacat 360  Q
    ||||||| |||||||||| ||| |||||  |||| |||||  || |||||||||||||||||||||| | | ||||||| || | |||||||||||||||    
T  4248 tgccccccagaaacgttaggtttgaact--ctctttcgatcaag-agaaacttgacgtttctgaaaatttc-gatgaagcgtgactcctcagcatgacat 4153  T
Q  361 cattcttttgaaaacaggatatttcaaaaggtgtagaaccgtcctcataaggacttagtgggccatacc-gtcattgggaaccat-aaaaaacaactgtt 458  Q
    || |||||| | ||  ||||| ||||||||   || ||||||| |||| ||  |||||||||||||    ||||||||||||||| ||||||||||||||    
T  4152 cactcttttaacaaagggataattcaaaagtctta-aaccgtcttcatcagagcttagtgggccatgtttgtcattgggaaccatcaaaaaacaactgtt 4054  T
Q  459 ccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttacttcgtttcttttagttatttttactcttct 558  Q
    ||| ||||||||||||||||||||||||||||| ||||||||| ||| |  | || || ||||||||||||| |  || ||||| ||||||||||||| |    
T  4053 ccatgcgatgattgacatctgtccaatatcaaaggctatatataaccttaggccatac-tttactcttactttgcctcctttag-tatttttactctttt 3956  T
Q  559 caccatccccttcttctaccttacgatccaaa 590  Q
    ||||||| |||||||||||||| |||| ||||    
T  3955 caccatctccttcttctaccttgcgattcaaa 3924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 5608 - 5351
Alignment:
Q  1 ctaatcacatcttttcgattcaaaa-tcgaaaatagccgttccaaagctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttg 99  Q
    |||||| |||| ||||||||||||| |||||| ||||||||| ||| ||||| |||||||||||| ||||||||||||||||||| | ||| |||||| |    
T  5608 ctaatcccatcctttcgattcaaaaatcgaaactagccgttcgaaaactagctgtttgctaaccgcttggtcttatccacaagacatgaag-gcgcgtcg 5510  T
Q  100 acaatttctcttacccgtcgaactaaaaacaacttcttcgattcttgctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccat 199  Q
    |||| |||| | | |||||||||||||| || |||||||||||| | |||| ||| || ||||||| |||||||||| | |||||||||||||| |||||    
T  5509 acaacttctttcatccgtcgaactaaaa-cagcttcttcgattcctactgaggtacacatgtatttgtcgatggatt-tcttcacaaagctacgccccat 5412  T
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaa 260  Q
    |||| ||||||| | |||||||||||||||||||||||| ||| |||||||| ||||||||    
T  5411 ttttgggtcaaacccttgactgcattaaatgatcatattctcacaaatattgactaacaaa 5351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1701 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold1701
Description:

Target: scaffold1701; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 485 - 601
Target Start/End: Complemental strand, 1454 - 1336
Alignment:
Q  485 tatcaaaagctatatatgaccctgagtcacacttttactcttacttcgtttct-tttagttatttttactcttctcaccatccccttcttctaccttacg 583  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1454 tatcaaaagctatatatgaccctgagtcatacttttactcttacttcgtttctctttagttatttttactcttttcaccatccccttcttctaccttacg 1355  T
Q  584 a-tccaaagtactgttcat 601  Q
    | | |||| ||||||||||    
T  1354 atttcaaaatactgttcat 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 86; Significance: 8e-41; HSPs: 3)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 47 - 256
Target Start/End: Original strand, 28715 - 28921
Alignment:
Q  47 ctagccgtttgctaaccgtttggtcttatccacaagaccttaagagcgcgttgacaatttctcttacccgtcgaactaaaaacaacttcttcgattcttg 146  Q
    |||||| ||||||||||| |||||||||| |||||||||| ||| |||||| ||||| |||| | | | ||||||||||||  | |||||||||||| ||    
T  28715 ctagccatttgctaaccgcttggtcttattcacaagacctgaag-gcgcgtcgacaacttctttcatctgtcgaactaaaat-agcttcttcgattcctg 28812  T
Q  147 ctgaagtagacttgtatttttcgatggattcttttcacaaagctacggcccatttttaggtcaaatctttgactgcattaaatgatcatattttcataaa 246  Q
    |||| ||| || ||||||| |||||||||| | ||||||||||||   ||||||||||||||||| | |||||||||||||||||||||||| ||| |||    
T  28813 ctgaggtacacatgtatttgtcgatggatt-tcttcacaaagctaaaccccatttttaggtcaaacccttgactgcattaaatgatcatattctcacaaa 28911  T
Q  247 tattggctaa 256  Q
    ||||||||||    
T  28912 tattggctaa 28921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 29668 - 29755
Alignment:
Q  199 tttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattg-cccccagaaacgttatgttcga 285  Q
    ||||| ||||||| ||||||||| ||||||||||    |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  29668 tttttcggtcaaacctttgactgtattaaatgatacccttttcacaaatattggctaacaaattgccccccagaaacgttatgttcga 29755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 523
Target Start/End: Original strand, 29902 - 29994
Alignment:
Q  431 tcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttact 523  Q
    |||||||||||||| ||||||||| ||||||||||||   ||||||||| | ||||||||||| ||||||| ||| ||||||| | |||||||    
T  29902 tcattgggaaccatcaaaaacaaccgttccacgcgattgctgacatctggcaaatatcaaaagttatatataaccttgagtcatatttttact 29994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 199 - 582
Target Start/End: Complemental strand, 43993 - 43610
Alignment:
Q  199 tttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc-agaaacgttatgttcgaactttctctctc 297  Q
    ||||| ||||||| | |||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||| ||| | | ||  ||    
T  43993 tttttgggtcaaacccttgactgcattaaatgataatattttcacaaatatcggctaacaaattgccccctagaaacgttatgtttgaaatct-tccttc 43895  T
Q  298 gatttaggagaaacttgacgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattcttttgaaaacaggatatttcaaaaggtgtaga 397  Q
    || | | |||||||||||||||||| ||||||   ||| |||||| | || |  || |||||||| |||||||| ||  ||||||||||||| || | ||    
T  43894 ga-tcaagagaaacttgacgtttct-aaaaatttcgataaagtgtgactcttatgcgtgacatcactcttttgacaaggggatatttcaaaa-gttttga 43798  T
Q  398 accgtcctcataaggacttagtgggccat-accgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagcta 496  Q
    ||||||  ||| ||  |||||||||||||    ||  |||||||| || |||||||||||||||| ||||||||| ||| |||||| | |||||| | ||    
T  43797 accgtctccattagcgcttagtgggccatgtttgttcttgggaactatcaaaaacaactgttccatgcgatgatttacacctgtcccacatcaaaggtta 43698  T
Q  497 tatat--gaccctgagtcacacttttactcttacttcg-tttcttttagttatttttactcttctcaccatccccttcttctaccttac 582  Q
    |||||  |||  || | || ||||||||||| |||| |  | ||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  43697 tatatacgactttgggccatacttttactctcactttgcctccttttag-tatttttactcttttcaccatctccttcttctaccttac 43610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 22853 - 22758
Alignment:
Q  164 ttttcgatggattcttttcacaaagctacggccca-tttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||||||   |||||||| ||| | |||| ||||| ||||||| | |||||||||||||||||| ||||||||| |||||| ||||||||    
T  22853 ttttcgatggatttccttcacaaatctaagtcccactttttgggtcaaacccttgactgcattaaatgataatattttcacaaatatcggctaaca 22758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 434 - 585
Target Start/End: Complemental strand, 23496106 - 23495954
Alignment:
Q  434 ttgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttacttcg 532  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||| ||||||||||||| | || || ||||||||||| |||| |    
T  23496106 ttgggaaccatcaaaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggctatatatgaccttaagccatacttttactctcactttg 23496007  T
Q  533 tttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
      || |||   ||||||||||||| |||||||| |||||||||||||||||||    
T  23496006 cctccttttaatatttttactcttttcaccatctccttcttctaccttacgat 23495954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 433 - 585
Target Start/End: Original strand, 19025959 - 19026112
Alignment:
Q  433 attgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttacttc 531  Q
    |||||||||||| ||||||||||||||||| |||||  |||||||||||| || |||||| ||||||||||||| || |||| ||||||||||| ||||     
T  19025959 attgggaaccatcaaaaaacaactgttccatgcgatcgttgacatctgtcaaacatcaaaggctatatatgaccttgggtcatacttttactctcacttt 19026058  T
Q  532 g-tttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
    |  | ||||||| ||||||||||||| ||||| |  ||| ||||| |||||||||    
T  19026059 gcctccttttag-tatttttactcttttcaccgtatcctccttcttccttacgat 19026112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 19025721 - 19025803
Alignment:
Q  201 tttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattg-cccccagaaacgttatgtt 282  Q
    ||||||||||| | ||||||||||||||||||   ||||||| |||||| ||||||||||||| |||||||||||||| ||||    
T  19025721 tttaggtcaaacccttgactgcattaaatgatagcattttcacaaatatcggctaacaaattgccccccagaaacgttttgtt 19025803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 16209596 - 16209539
Alignment:
Q  203 taggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaa 260  Q
    |||||||||  |||||||||||||||||||    |||||| |||||||||||||||||    
T  16209596 taggtcaaacttttgactgcattaaatgatacccttttcacaaatattggctaacaaa 16209539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 30755858 - 30755914
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||| ||||||||| ||||||||||    |||||| |||||||||||||||    
T  30755858 ttaggtcaaacctttgactgtattaaatgatacccttttcacaaatattggctaaca 30755914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 159 - 268
Target Start/End: Original strand, 11403 - 11511
Alignment:
Q  159 tgtatttttcgatggattcttttcacaaagctacggcccatttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    ||||||| |||||||||| | |||||||||||||| |||| |||| ||||||| | |||||||||||||||||||||||||||| |||||||| ||||||    
T  11403 tgtatttgtcgatggatt-tcttcacaaagctacgccccaattttgggtcaaacccttgactgcattaaatgatcatattttcacaaatattgactaaca 11501  T
Q  259 aattgccccc 268  Q
    ||||||||||    
T  11502 aattgccccc 11511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 433 - 526
Target Start/End: Original strand, 27343 - 27436
Alignment:
Q  433 attgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactctt 526  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||    
T  27343 attgggaaccataaaaaacaactgtcccatgcgatcattgacatctgtcaaatatcaaaggctatatatgaccttgagtcatacttttactctt 27436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 27110 - 27190
Alignment:
Q  203 taggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattg-cccccagaaacgttatgtt 282  Q
    ||||||||| ||||||||||||||||||||    | |||| |||||||||||||||||||| |||||||||||||||||||    
T  27110 taggtcaaacctttgactgcattaaatgatagcctcttcacaaatattggctaacaaattgtcccccagaaacgttatgtt 27190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 431 - 585
Target Start/End: Original strand, 118869 - 119023
Alignment:
Q  431 tcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttactt 530  Q
    |||||||||||||||||||||||| |||||| | ||| | ||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| | ||||    
T  118869 tcattgggaaccataaaaaacaaccgttccatgagattaatgacatctgtcaaatatcaaaggctatatatgaccttgagtcatacttttactttcactt 118968  T
Q  531 cgtttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
     |  || |||  | |||||||||||||||||| |  ||| ||||| |||||||||    
T  118969 tgcctccttttatcatttttactcttctcaccgtatcctccttcttccttacgat 119023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 202 - 327
Target Start/End: Original strand, 118636 - 118760
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaa-ttgcccccagaaacgttatgttcgaactttctctctcgat 300  Q
    |||||||||| ||||||||||||||||||||    |||||| ||||||||||||||||| || ||||||||||||||||||| |||| |  ||| ||||     
T  118636 ttaggtcaaacctttgactgcattaaatgatacccttttcacaaatattggctaacaaatttccccccagaaacgttatgtttgaac-tcgtctttcga- 118733  T
Q  301 ttaggagaaacttgacgtttctgaaaa 327  Q
    | | |||||||||||||||||||||||    
T  118734 tcaagagaaacttgacgtttctgaaaa 118760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 142548 - 142604
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||| ||||||||||||||||||||    |||||| |||||||||||||||    
T  142548 ttaggtcaaacctttgactgcattaaatgatacccttttcacaaatattggctaaca 142604  T

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Target: scaffold0081 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 433 - 530
Target Start/End: Original strand, 44829 - 44926
Alignment:
Q  433 attgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttactt 530  Q
    |||||||||||||||||||||| || ||| ||||| | ||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  44829 attgggaaccataaaaaacaaccgtcccatgcgatcaatgacatctgtcaaatatcaaaggctatatatgaccttgagtcatacttttactcttactt 44926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 44595 - 44675
Alignment:
Q  203 taggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattg-cccccagaaacgttatgtt 282  Q
    ||||||||| ||||||||||||||||||||    | |||| |||||||||||||||||||| |||||||||||||||||||    
T  44595 taggtcaaacctttgactgcattaaatgatagcctcttcacaaatattggctaacaaattgccccccagaaacgttatgtt 44675  T

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Target: scaffold0001 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 434 - 530
Target Start/End: Original strand, 115915 - 116011
Alignment:
Q  434 ttgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttactt 530  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||| ||||||||| ||| || |||| ||||||||||| ||||    
T  115915 ttgggaaccataaaaaacaaccgttccatgcgatcattgacatctgtcaaatatcaaaggctatatataaccttgggtcatacttttactctcactt 116011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 389890 - 389803
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgcccc-cagaaacgttatgttcgaact 288  Q
    |||||||||| | ||||||| ||||||||||    |||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  389890 ttaggtcaaacccttgactgtattaaatgatacccttttcacaaatattggctaacaaattgccccgcagaaacgttatgttcgaact 389803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 115679 - 115761
Alignment:
Q  202 ttaggtcaaatc-tttgactgcattaaatgatcatattttcataaatattggctaacaaattg-cccccagaaacgttatgtt 282  Q
    |||||||||| | ||| ||||||||||||||| |  |||||| |||||||||||||||||||| |||||||||||||||||||    
T  115679 ttaggtcaaaacgtttaactgcattaaatgataaacttttcacaaatattggctaacaaattgccccccagaaacgttatgtt 115761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 510
Target Start/End: Complemental strand, 389650 - 389570
Alignment:
Q  431 tcattgggaaccataaaaaa-caactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgag 510  Q
    |||||||||||| ||||||| |||| ||||||||||||   ||||||||||| || |||||| | ||||||| ||||||||    
T  389650 tcattgggaaccgtaaaaaaacaaccgttccacgcgattgctgacatctgtcaaagatcaaaggttatatataaccctgag 389570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 433 - 585
Target Start/End: Complemental strand, 40889 - 40736
Alignment:
Q  433 attgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttacttc 531  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||| || |||||| |||||||||||||    |||| ||||||||||| ||||     
T  40889 attgggaaccatcaaaaaacaactgttccacgcgatggttgacatctgtcaaacatcaaaggctatatatgacctcaggtcatacttttactctcacttt 40790  T
Q  532 g-tttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
    |  | ||||||| ||||||||||||| ||||| |  ||| ||||| |||||||||    
T  40789 gcctccttttag-tatttttactcttttcaccgtatcctccttcttccttacgat 40736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 41132 - 41008
Alignment:
Q  200 ttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgc-ccccagaaacgttatgttcgaactttctctctcg 298  Q
    |||||||||||  | ||||||||||||||| ||   ||||||| || ||| |||||||||||||| ||||||||||||||||||  |||  ||| | |||    
T  41132 ttttaggtcaagcccttgactgcattaaataatagcattttcacaattatcggctaacaaattgccccccagaaacgttatgtttaaac--tctttttcg 41035  T
Q  299 atttaggagaaacttgacgtttctgaaa 326  Q
    | | | ||||||||||||||||||||||    
T  41034 a-tcaagagaaacttgacgtttctgaaa 41008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 433 - 562
Target Start/End: Complemental strand, 58055 - 57923
Alignment:
Q  433 attgggaaccataaaaaac--aactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctga-gtcacacttttactcttact 529  Q
    ||||||||||||||||||   ||||||||||||||||| |||||||||||| || |||||| ||||||||||||| | | |||||||||||||||| |||    
T  58055 attgggaaccataaaaaaacaaactgttccacgcgatggttgacatctgtcaaacatcaaaggctatatatgacctttaggtcacacttttactctcact 57956  T
Q  530 tcgtttcttttagttatttttactcttctcacc 562  Q
    | | ||| |||   ||||||||||||| |||||    
T  57955 ttgcttcctttcagtatttttactcttttcacc 57923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 58296 - 58173
Alignment:
Q  201 tttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattg-cccccagaaacgttatgttcgaactttctctctcga 299  Q
    ||||||||||| | ||||||||||||||||||  |||||||| |||||| ||||||||||| | ||||||||||||||||||| ||||  ||| | ||||    
T  58296 tttaggtcaaacccttgactgcattaaatgatagtattttcacaaatatcggctaacaaatggccccccagaaacgttatgtttgaac--tctttttcga 58199  T
Q  300 tttaggagaaacttgacgtttctgaaa 326  Q
     | | ||||||||||||||||||||||    
T  58198 -tcaagagaaacttgacgtttctgaaa 58173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 22421 - 22334
Alignment:
Q  202 ttaggtcaaa-tctttgactgcattaaatgatcatattttcataaatattggctaacaaattgcccccagaaacgttatgttcgaact 288  Q
    |||||||||| |||||||| | ||||||||||    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22421 ttaggtcaaactctttgaccgtattaaatgatacccttttcacaaatattggctaacaaattgcccccagaaacgttatgttcgaact 22334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 433 - 585
Target Start/End: Complemental strand, 84594 - 84442
Alignment:
Q  433 attgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttacttcg 532  Q
    |||||||||||| ||||||||| |||||| |||||  |||||||||||| ||||||||| ||||||||| ||| ||  ||| ||||||||| | |||| |    
T  84594 attgggaaccatcaaaaacaaccgttccatgcgatagttgacatctgtcaaatatcaaaggctatatataaccttggatcatacttttactttcactttg 84495  T
Q  533 tttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
      ||||||  | |||||||||||| ||||| |  ||| ||||| |||||||||    
T  84494 cctctttttatcatttttactcttttcaccgtatcctccttcttccttacgat 84442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 84829 - 84705
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgc-ccccagaaacgttatgttcgaactttctctctcgat 300  Q
    ||||||||||  ||||||| ||||||||||     |||||| ||||||||||||||||||||| ||||||||||||||||||  |||| | ||| ||||     
T  84829 ttaggtcaaacatttgactacattaaatgaaacccttttcacaaatattggctaacaaattgccccccagaaacgttatgtttaaactct-tctttcga- 84732  T
Q  301 ttaggagaaacttgacgtttctgaaaa 327  Q
    | | |||||||||||||||||||||||    
T  84731 tcacgagaaacttgacgtttctgaaaa 84705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 510
Target Start/End: Complemental strand, 22179 - 22103
Alignment:
Q  434 ttgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgag 510  Q
    ||||||||||| ||||||||| ||||||||||||   ||||||||||  || |||||| ||||||||| ||||||||    
T  22179 ttgggaaccatcaaaaacaaccgttccacgcgattgctgacatctgtaaaacatcaaaggctatatataaccctgag 22103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 433 - 530
Target Start/End: Complemental strand, 21529864 - 21529767
Alignment:
Q  433 attgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttactt 530  Q
    |||||||||||| ||||||||| |||||| |||||  |||||||||||| ||||||||| ||||||||||||| || |||  ||||||||||| ||||    
T  21529864 attgggaaccatcaaaaacaaccgttccatgcgatcgttgacatctgtcaaatatcaaaggctatatatgaccttgggtcgtacttttactctcactt 21529767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 21530100 - 21530019
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgc-ccccagaaacgttatgtt 282  Q
    |||||||||| ||||||||||||||||||||    |||||| ||||||||||||||||||||| |||||||||||| |||||    
T  21530100 ttaggtcaaacctttgactgcattaaatgatagccttttcacaaatattggctaacaaattgccccccagaaacgtgatgtt 21530019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 21504433 - 21504377
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||| ||||||||||||||||||||    |||||| |||||||||||||||    
T  21504433 ttaggtcaaacctttgactgcattaaatgatagccttttcacaaatattggctaaca 21504377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 21982944 - 21983000
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||| ||||||||||||||||||||    |||||| |||||||||||||||    
T  21982944 ttaggtcaaacctttgactgcattaaatgatacccttttcacaaatattggctaaca 21983000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 26274427 - 26274483
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||| ||||||||||||||||||||    |||||| |||||||||||||||    
T  26274427 ttaggtcaaacctttgactgcattaaatgatagccttttcacaaatattggctaaca 26274483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 20506649 - 20506705
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||| ||||||||| ||||||||||    |||||| |||||||||||||||    
T  20506649 ttaggtcaaacctttgactgtattaaatgatacccttttcacaaatattggctaaca 20506705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 28922 - 28834
Alignment:
Q  201 tttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgc-ccccagaaacgttatgttcgaact 288  Q
    ||||||||||| ||||||||| ||||||||||  | |||||| |||||| |||||||||||||| |||||||||| |||||||||||||    
T  28922 tttaggtcaaacctttgactgtattaaatgatactcttttcacaaatatcggctaacaaattgccccccagaaacattatgttcgaact 28834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 510
Target Start/End: Complemental strand, 28684 - 28604
Alignment:
Q  431 tcattgggaaccataaaaaa-caactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgag 510  Q
    |||||||||||||||||||| |||| ||||||||||||   || |||||||  || |||||| | ||||||| ||||||||    
T  28684 tcattgggaaccataaaaaaacaaccgttccacgcgattgctgtcatctgttaaacatcaaaggttatatataaccctgag 28604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15478 - 15555
Alignment:
Q  1 ctaatcacatcttttcgattcaaaatcgaaaatagccgttc-caaagctagccgtttgctaaccgtttggtcttatcc 77  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||| | |||| |||||||    
T  15478 ctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaaactagccgtttgctaactgcttggccttatcc 15555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 525
Target Start/End: Original strand, 15565 - 15879
Alignment:
Q  216 tgactgcattaaatgatcatattttcataaatattggctaacaaattgccccc-agaaacgttatgttcgaactttctctctcgatttaggagaaacttg 314  Q
    |||||||||||||||||  |||||||| |||||| ||||||||| || ||||| ||||||||||||||  ||||  || |  ||||  || |||||||||    
T  15565 tgactgcattaaatgatagtattttcacaaatatcggctaacaattttccccccagaaacgttatgtttaaact--ctttaccgatcaag-agaaacttg 15661  T
Q  315 acgtttctgaaaaatcctgatgaagtgtaaatcctcagcatgacatcattctttt-gaaaacaggatatttcaaaaggtgtag-----aaccgtcctcat 408  Q
    |||||||||||   | | ||| || ||| | |||||||||||||||||||||||| ||||| |||||| ||||| || |  |      |||||||| |||    
T  15662 acgtttctgaatttttc-gataaaatgtgactcctcagcatgacatcattctttttgaaaaaaggatacttcaagagtttaacttttaaaccgtccccat 15760  T
Q  409 aaggacttagtgggcca--taccgtcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccc 506  Q
     |   ||||||||||||  |   || |||||||||  | ||||||||||||||||||||||| ||| ||||||||  | |||||| |||||||||||||     
T  15761 catagcttagtgggccaggttttgttattgggaactgtcaaaaacaactgttccacgcgatggttgtcatctgtcagacatcaaaggctatatatgacct 15860  T
Q  507 tgagtcacacttttactct 525  Q
    |  |||| |||||||||||    
T  15861 taggtcatacttttactct 15879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 24879 - 24754
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgc--ccccagaaacgttatgttcgaactttctctctcga 299  Q
    |||||||||  ||||||||||||||||||||    |||||| |||||||||||||||||||||  ||||||||||||||||||  |||| | ||| ||||    
T  24879 ttaggtcaagcctttgactgcattaaatgatagccttttcacaaatattggctaacaaattgcccccccagaaacgttatgtttaaactct-tctttcga 24781  T
Q  300 tttaggagaaacttgacgtttctgaaaa 327  Q
     | | ||| |||||||||||||||||||    
T  24780 -tcaagaggaacttgacgtttctgaaaa 24754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 433 - 522
Target Start/End: Complemental strand, 24644 - 24555
Alignment:
Q  433 attgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttac 522  Q
    |||||||||||| |||||||| ||||||| |||||  ||||||||| || ||||||||| ||||||||| ||| || |||| ||||||||    
T  24644 attgggaaccatcaaaaacaattgttccatgcgattgttgacatctctcaaatatcaaaggctatatataaccttgggtcatacttttac 24555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 43450 - 43545
Alignment:
Q  164 ttttcgatggattcttttcacaaagctacggccca-tttttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    |||||||||||||   |||||||||||| | |||| ||||| ||||||| | |||||||||||||||||| ||||||||| |||||| ||||||||    
T  43450 ttttcgatggatttccttcacaaagctaagtcccactttttgggtcaaacccttgactgcattaaatgataatattttcacaaatatcggctaaca 43545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 431 - 510
Target Start/End: Original strand, 151971 - 152050
Alignment:
Q  431 tcattgggaaccataaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgag 510  Q
    |||||||||||||||||||||||| ||||||||||||   ||||||||||  ||||||||| | ||||||| ||||||||    
T  151971 tcattgggaaccataaaaaacaaccgttccacgcgattgctgacatctgtaaaatatcaaaggttatatataaccctgag 152050  T

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Target: scaffold0019; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 151766 - 151818
Alignment:
Q  237 ttttcataaatattggctaacaaa-ttgcccccagaaacgttatgttcgaact 288  Q
    |||||| ||||||||||||||||| || ||||||||||| |||||||||||||    
T  151766 ttttcacaaatattggctaacaaatttccccccagaaacattatgttcgaact 151818  T

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Target: scaffold0304 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 6127 - 6204
Alignment:
Q  206 gtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattg-cccccagaaacgttatgtt 282  Q
    |||||| | ||||||||||||||||||  |||||||| |||||| ||||||||||||| |||||| ||||||||||||    
T  6127 gtcaaacccttgactgcattaaatgatagtattttcacaaatatcggctaacaaattgccccccataaacgttatgtt 6204  T

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Target: scaffold0304; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 433 - 585
Target Start/End: Original strand, 6359 - 6512
Alignment:
Q  433 attgggaaccat-aaaaaacaactgttccacgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcacacttttactcttacttc 531  Q
    ||||||||| || |||||||||||||||||| ||||| ||||||||||||    |||||| |||||| |||||| |  | || ||||||||| | ||||     
T  6359 attgggaactatcaaaaaacaactgttccacacgatggttgacatctgtcaggcatcaaaggctatacatgaccttaggccatacttttactatcacttt 6458  T
Q  532 g-tttcttttagttatttttactcttctcaccatccccttcttctaccttacgat 585  Q
    |  | ||||||| |||||||||| || |||||||| ||||||||| |||||||||    
T  6459 gcctccttttag-tatttttacttttttcaccatctccttcttcttccttacgat 6512  T

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Target: scaffold0046 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 30352 - 30300
Alignment:
Q  237 ttttcataaatattggctaacaaattgc-ccccagaaacgttatgttcgaact 288  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  30352 ttttcacaaatattggctaacaaattgccccccagaaacgttatgttcgaact 30300  T

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Target: scaffold0239 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 17352 - 17440
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaaattgcccc--cagaaacgttatgttcgaact 288  Q
    ||||||||| ||||||||  |||||||||||    |||| | ||||||||| ||||||||||||||  |||||||||||||||||||||    
T  17352 ttaggtcaactctttgaccacattaaatgataccctttttacaaatattggataacaaattgcccccccagaaacgttatgttcgaact 17440  T

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Target: scaffold0216 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 20371 - 20416
Alignment:
Q  244 aaatattggctaacaaattgccccc-agaaacgttatgttcgaact 288  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  20371 aaatattggctaacaaattgccccctagaaacgttatgttcgaact 20416  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 18832 - 18889
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaa 259  Q
    |||||||||| ||||||||||||||||||||    |||||| ||||||||||||||||    
T  18832 ttaggtcaaacctttgactgcattaaatgatagccttttcacaaatattggctaacaa 18889  T

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Target: scaffold0021; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 28363 - 28420
Alignment:
Q  202 ttaggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaacaa 259  Q
    |||||||||| ||||||||||||||||||||    |||||| ||||||||||||||||    
T  28363 ttaggtcaaacctttgactgcattaaatgatagccttttcacaaatattggctaacaa 28420  T

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Target: scaffold0169 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 35637 - 35594
Alignment:
Q  216 tgactgcattaaatgatcatattttcataaatattggctaacaa 259  Q
    |||||||||||||||||  ||||||||||||||| |||||||||    
T  35637 tgactgcattaaatgatagtattttcataaatatcggctaacaa 35594  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 63583 - 63528
Alignment:
Q  203 taggtcaaatctttgactgcattaaatgatcatattttcataaatattggctaaca 258  Q
    ||||||||  ||||||||||||||||||||  | |||||| |||||||||||||||    
T  63583 taggtcaaccctttgactgcattaaatgatactcttttcacaaatattggctaaca 63528  T

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