View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18174_high_7 (Length: 210)

Name: NF18174_high_7
Description: NF18174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18174_high_7
NF18174_high_7
[»] chr4 (1 HSPs)
chr4 (11-208)||(38116272-38116460)
[»] chr8 (2 HSPs)
chr8 (11-208)||(45113687-45113898)
chr8 (11-40)||(11288320-11288349)
[»] chr5 (1 HSPs)
chr5 (11-102)||(1015885-1015973)
[»] chr3 (2 HSPs)
chr3 (104-180)||(22776232-22776309)
chr3 (67-112)||(22776157-22776202)
[»] chr7 (1 HSPs)
chr7 (148-208)||(34351873-34351933)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 38116272 - 38116460
Alignment:
Q  11 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttagcagcagtttctg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  38116272 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggct---------gagactgctgatgttagcagcagtttctg 38116362  T
Q  111 tttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38116363 tttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 38116460  T

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Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 45113687 - 45113898
Alignment:
Q  11 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttag------------ 98  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||    |||||| |||||||||||||||||| ||||||                
T  45113687 atcatcatagttgaaaagggtaggagcaagtctttgagaaagatgtcagtggt---tgggctagttcggctgagactgctgctgttagtagctgctagct 45113783  T
Q  99 -------cagcagtttctgtttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgt 191  Q
           |||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||| |  ||| |||||    
T  45113784 gcgtgtgcagctgtttctgtttggttgtggcagctagggtgtggccgatttaggtattggtttggaacaactgctggtgcatttttttg--ggtggttgt 45113881  T
Q  192 tgttggaattgatgatg 208  Q
    |||||||||||||||||    
T  45113882 tgttggaattgatgatg 45113898  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 40
Target Start/End: Original strand, 11288320 - 11288349
Alignment:
Q  11 atcatcatagttgaaaagggtaggagcagg 40  Q
    ||||||||||||||||||||||||||||||    
T  11288320 atcatcatagttgaaaagggtaggagcagg 11288349  T

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Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 1015885 - 1015973
Alignment:
Q  11 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttagcagc 102  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||| ||   ||||||||||||||||||||||||| || ||||||||||    
T  1015885 atcatcataactgaaaagggtaggagcaggtctttgagaaatatgtctgt---ggctgggctggttcggctgagactgttgctgttagcagc 1015973  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 22776232 - 22776309
Alignment:
Q  104 gtttctgtttggttgtggcagcta-tggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttgg 180  Q
    ||||||||||||||||||||||||  || || ||||||||| || |||||||||| || ||||||||| |||||||||    
T  22776232 gtttctgtttggttgtggcagctaggggcgttgccggtttacgttttggtttggaacagctgctggtgtgttttttgg 22776309  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 22776157 - 22776202
Alignment:
Q  67 tgggctggttcggctgagactgctgatgttagcagcagtttctgtt 112  Q
    |||||||||||||||||||||| || |||||||||| ||| |||||    
T  22776157 tgggctggttcggctgagactgttgctgttagcagctgttgctgtt 22776202  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 34351933 - 34351873
Alignment:
Q  148 ttggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 208  Q
    ||||| |||||||| || ||||| | ||||||| ||||||||| |||||||||||||||||    
T  34351933 ttggtgtggagcaaatgttggtgtggtttttgggtggttgttgctgttggaattgatgatg 34351873  T

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