View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18174_low_11 (Length: 206)
Name: NF18174_low_11
Description: NF18174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18174_low_11 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 36 - 206
Target Start/End: Complemental strand, 45113864 - 45113691
Alignment:
| Q |
36 |
tgcaccagcaattgttccaaaccaatacctaaatcggccacaccctagctgccac---caaacagaaacaactgcacacgcagctagcagctgctaacag |
132 |
Q |
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| T |
45113864 |
tgcaccagcagttgttccaaaccaatacctaaatcggccacaccctagctgccacaaccaaacagaaacagctgcacacgcagctagcagctactaacag |
45113765 |
T |
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| Q |
133 |
cagcggtctcagccgaactagcccaaccaccgacatctttctcaaagagttgctcctacccttttcaactatga |
206 |
Q |
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| T |
45113764 |
cagcagtctcagccgaactagcccaaccactgacatctttctcaaagacttgctcctacccttttcaactatga |
45113691 |
T |
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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 1016006 - 1015896
Alignment:
| Q |
89 |
accaaacagaaacaactgcacacgcagctagcagctgctaacagcagcggtctcagccgaactagcccaaccaccgacatctttctcaaagagttgctcc |
188 |
Q |
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| T |
1016006 |
accaaacagaaacagctgcacacgcagctagcagctgctaacagcaacagtctcagccgaaccagcccagccacagacatatttctcaaagacctgctcc |
1015907 |
T |
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| Q |
189 |
tacccttttca |
199 |
Q |
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| T |
1015906 |
tacccttttca |
1015896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 38116323 - 38116276
Alignment:
| Q |
159 |
ccaccgacatctttctcaaagagttgctcctacccttttcaactatga |
206 |
Q |
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| T |
38116323 |
ccaccgacatctttctcaaagacctgctcctacccttttcaactatga |
38116276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 38116423 - 38116370
Alignment:
| Q |
37 |
gcaccagcaattgttccaaaccaatacctaaatcggccacaccctagctgccac |
90 |
Q |
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| T |
38116423 |
gcaccagcagttgctccaaaccaatacctaaaccggccacaccatagctgccac |
38116370 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 22776299 - 22776196
Alignment:
| Q |
38 |
caccagcaattgttccaaaccaatacctaaatcggccacaccc-tagctgccac---caaacagaaacaactgcacacgcagctag---cagctgctaac |
130 |
Q |
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|||||||| ||||||||||||| || |||| |||| || ||| |||||||||| ||||||||||||||| |||||||||| || ||||||||||| |
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| T |
22776299 |
caccagcagctgttccaaaccaaaacgtaaaccggcaacgcccctagctgccacaaccaaacagaaacaactacacacgcagcaagcaccagctgctaac |
22776200 |
T |
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| Q |
131 |
agca |
134 |
Q |
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|||| |
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| T |
22776199 |
agca |
22776196 |
T |
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