View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18174_low_6 (Length: 303)
Name: NF18174_low_6
Description: NF18174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18174_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 4642159 - 4642463
Alignment:
| Q |
7 |
ttttttgtaaattgcaaccttgtttattatctacaaatcattaacacagacac-------------attaacatcaataataatttaaaaagtgacataa |
93 |
Q |
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| T |
4642159 |
ttttttgtaaattgcaaccttgtttattatctacaaattattaacacagacaccggacactgacacattaacatcaataataatttaaaaagtgacataa |
4642258 |
T |
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| Q |
94 |
ctgaatagcttcgtgtcggtatttgacattgacacttgtaacactagacttgacttctattataagtgttgatgctacaaagtttgttaatgttactgtt |
193 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4642259 |
ctgaatagcttcg-----gtatttgacattgacacttgtaacactagacttgacttctattataagtgttgatgctacaaagtttgttaatgttactgtt |
4642353 |
T |
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| Q |
194 |
tttgtgtgtgctgggtttgtgaagctgagtttttcaggcttccatatttgaaaccttatctgggtttcataaaaggtaggaacattgagcatggagtgaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
4642354 |
tttgtgtgtgctgggtttgtgaagctgagtttttcaggcttccatatttgaaaccttatctgggtttcataaatggtgggaacattgagcatggagtgaa |
4642453 |
T |
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| Q |
294 |
ttttgcggtt |
303 |
Q |
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| T |
4642454 |
ttttgcggtt |
4642463 |
T |
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