View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18174_low_7 (Length: 284)

Name: NF18174_low_7
Description: NF18174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18174_low_7
NF18174_low_7
[»] chr1 (2 HSPs)
chr1 (10-263)||(8106893-8107143)
chr1 (10-256)||(8111546-8111788)
[»] chr8 (4 HSPs)
chr8 (153-257)||(772590-772690)
chr8 (154-212)||(25113457-25113515)
chr8 (154-196)||(10894546-10894588)
chr8 (154-196)||(38050247-38050289)
[»] chr6 (1 HSPs)
chr6 (148-228)||(30890105-30890182)
[»] chr5 (1 HSPs)
chr5 (154-196)||(501099-501141)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 8107143 - 8106893
Alignment:
Q  10 catcatcaaaacaacagtactaagcagcttcannnnnnn--agttgaagaggatgttaaaagagatgagcagctgccgcacactatatacaacaaatgtt 107  Q
    ||||||||||||||||||||||||||||||||         |||||||| | ||||||||||||||||||||||||||||||||||||||||   |||||    
T  8107143 catcatcaaaacaacagtactaagcagcttcatttttttttagttgaagggaatgttaaaagagatgagcagctgccgcacactatatacaa---atgtt 8107047  T
Q  108 tgcatnnnnnnntatataatttttacaacnnnnnnnn--gtttcaaattcatttaatatttctttatcatccaatcaaaattgattatgactcatctata 205  Q
    |||||       | |||||||||||||||          |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  8107046 tgcataaaaaaatgtataatttttacaacaaaaaaaaaagtttcaaattcatttaatgtttctttatcatccaatcaaaattgattatgactcatctat- 8106948  T
Q  206 tattttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaatgtataa 263  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8106947 ---tttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaatgtataa 8106893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 8111788 - 8111546
Alignment:
Q  10 catcatcaaaacaacagtactaagcagcttcannnnnnn--agttgaagaggatgttaaaagagatgagcagctgccgcacactatatacaacaaatgtt 107  Q
    ||||||||||||||||||||||||||||||||         |||||||| | ||||||||||||||||||||||||||||||||||||||||   |||||    
T  8111788 catcatcaaaacaacagtactaagcagcttcatttttttttagttgaagggaatgttaaaagagatgagcagctgccgcacactatatacaa---atgtt 8111692  T
Q  108 tgcatnnnnnnntatataatttttacaacnnnnnnnn-gtttcaaattcatttaatatttctttatcatccaatcaaaattgattatgactcatctatat 206  Q
    |||||         |||||||||||||||         |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |    
T  8111691 tgcataaaaaaaagtataatttttacaacaaaaaaaaagtttcaaattcatttaatgtttctttatcatccaatcaaaattgattatgactcatc----t 8111596  T
Q  207 attttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8111595 attttacaacaaccaatcaaaatagatcatgacactcatttgttaatcaa 8111546  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 772690 - 772590
Alignment:
Q  153 ttcatttaatatttctttatcatccaatcaaaattgattatgactcatctatatattttacaacaaccaatc--aaaatagatcatgacactcatttgtt 250  Q
    |||||||||| |||||||||||| ||||||||||  |||||||||||||    |||||| ||||||||||||  |||||||||||||  |||||||||||    
T  772690 ttcatttaatgtttctttatcattcaatcaaaatgaattatgactcatc----tatttttcaacaaccaatcaaaaaatagatcatg--actcatttgtt 772597  T
Q  251 aatcaat 257  Q
    |||||||    
T  772596 aatcaat 772590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 25113515 - 25113457
Alignment:
Q  154 tcatttaatatttctttatcatccaatcaaaattgattatgactcatctatatatttta 212  Q
    ||||||||| ||| ||||||||||||| ||||| ||||||||||||  |||||||||||    
T  25113515 tcatttaatgtttttttatcatccaattaaaatagattatgactcacttatatatttta 25113457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 10894546 - 10894588
Alignment:
Q  154 tcatttaatatttctttatcatccaatcaaaattgattatgac 196  Q
    ||||||||| |||  ||||||||||||||||||||||||||||    
T  10894546 tcatttaatgttttcttatcatccaatcaaaattgattatgac 10894588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 38050289 - 38050247
Alignment:
Q  154 tcatttaatatttctttatcatccaatcaaaattgattatgac 196  Q
    |||||||||||||  |||||||||||||||||| |||||||||    
T  38050289 tcatttaatattttcttatcatccaatcaaaatggattatgac 38050247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 30890182 - 30890105
Alignment:
Q  148 tcaaattcatttaatatttcttt-atcatccaatcaaaattgattatgactcatctatatattttacaacaaccaatcaaaa 228  Q
    ||||||||||||||| ||| ||| |||||||||||||||| ||| |||||||    ||||||||| ||||||||||| ||||    
T  30890182 tcaaattcatttaatgttttttttatcatccaatcaaaatagatcatgactc----atatatttttcaacaaccaataaaaa 30890105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 501099 - 501141
Alignment:
Q  154 tcatttaatatttctttatcatccaatcaaaattgattatgac 196  Q
    |||||||||| ||  ||||||||||||||||||||||||||||    
T  501099 tcatttaatactttcttatcatccaatcaaaattgattatgac 501141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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