View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18175_high_11 (Length: 237)
Name: NF18175_high_11
Description: NF18175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18175_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38892207 - 38892427
Alignment:
| Q |
1 |
aacttcacaacgaaacttgtgattgtaattgtatccataccacaactatgcactagagaagttcccaataaagagaggtcaagtcacaatggacttgtct |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
38892207 |
aacttcacaacggaacttgtgattgtaattgtatccataccacaactatgcactagagaagttcctaataaagagaggtcaagtcacaatggactcgtct |
38892306 |
T |
|
| Q |
101 |
aagtaccaagtctttccaagctagaaccttccaaaacaacacttccaaaccaaaagctcttatattagttgttgggtggtctgaaggagcactgaaagca |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38892307 |
aagtaccaagtctttcctagctagaaccttccaaaacaacacttccaaaccaaaagctcttatattagttgttgggtggtctgaaggagcacggaaagca |
38892406 |
T |
|
| Q |
201 |
acaacaaaccaattacctatg |
221 |
Q |
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||| | ||||||||||||||| |
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| T |
38892407 |
acagcgaaccaattacctatg |
38892427 |
T |
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