View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18175_high_5 (Length: 372)
Name: NF18175_high_5
Description: NF18175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18175_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 355
Target Start/End: Complemental strand, 41066540 - 41066198
Alignment:
| Q |
13 |
agaaaaaatagtactgctgctatgttttagatgagatagaacagtagcagaaaaccaactcatcatgtcaaacaatgcattaaattttcttatcttgttt |
112 |
Q |
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| T |
41066540 |
agaaaaactagtactgctgctatgttttagatgagatagaacagtagcagaaaaccaactcatcatgtcaaacaatgcattaaattttcttatcttgttt |
41066441 |
T |
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| Q |
113 |
ctcactatctccttgtttccattcatttcttctctaaaccaagaaggtctctctctactttcatggctttcaactttcaactcctcaaattctgtcccta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066440 |
ctcactatctccttgtttccattcatttcttctctaaaccaagaaggtctctctctactttcatggctttcaactttcaactcctcaaattctgtcccta |
41066341 |
T |
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| Q |
213 |
ccactactttctcatcatgggatccaactcacaaaaatccttgcagatgggattatataaaatgttctgcagaggagtttgttgaagagatcgtaataac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41066340 |
ccactactttctcatcatgggatccaactcacaaaaatccttgcagatgggattatataaaatgttctgcagcagagtttgttgaagagatcgtaataac |
41066241 |
T |
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| Q |
313 |
atcgatcgatcttcatagcggattccctacacagtttctttct |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066240 |
atcgatcgatcttcatagcggattccctacacagtttctttct |
41066198 |
T |
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