View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18175_high_6 (Length: 315)
Name: NF18175_high_6
Description: NF18175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18175_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 41066527 - 41066828
Alignment:
| Q |
1 |
gtactattttttctgtgttactactctctatttttctctgtatcatttgatacttgttggatattaaaattctcgtatcttcacttaaagttactgataa |
100 |
Q |
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| T |
41066527 |
gtactagtttttctatgttactactctctatttttctctttatcatttgatacttgttggatattaaaattctcgtatcttcacttaaagttactgataa |
41066626 |
T |
|
| Q |
101 |
agatgtagacagttcttttatccttcatcatcaaactatatatagttctcttttgtaatggatttacagcaaaggttaaagaaaaggacaaagtggaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066627 |
agatgtagacagttcttttatccttcatcatcaaactatatatagttctcttttgtaatggatttacagcaaaggttaaagaaaaggacaaagtggaagc |
41066726 |
T |
|
| Q |
201 |
attgtacaagcatgtgtggaacttcagtacgtgcggaagatatataaaagaaatgactcatatagttcgccccttaaagttttaagtaaagatgttgtgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066727 |
attgtacaagcatgtgtggaacttcagtacgtgcggaagatatataaaagaaatgactcatatagttcgccccttaaagttttaagtaaagatgttgtgt |
41066826 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
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|| |
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| T |
41066827 |
tc |
41066828 |
T |
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