View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18175_high_8 (Length: 259)
Name: NF18175_high_8
Description: NF18175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18175_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 44006310 - 44006078
Alignment:
| Q |
11 |
atcatcatgttactttagacaggacaattgatcgctttcataataacatttggttgtagnnnnnnncaaagaaaaacatccgattactatagacannnnn |
110 |
Q |
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| T |
44006310 |
atcatcatgttactttagacaggacaattgatcactttcataataacatttggttgtagtttttttcaaagaaaaacatccgattactatagacatattt |
44006211 |
T |
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| Q |
111 |
nnnnnnnngaattagcaaaatttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaatacaaaagagagaaacaacaagaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44006210 |
ttttttt-gaattagcaaaatttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaatacaaaagagagaa---acaagaa |
44006115 |
T |
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| Q |
211 |
aaataacagcagcagctgagctaacacagtaataatt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44006114 |
aaataacagcagcagctgagctaacacagtaataatt |
44006078 |
T |
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