View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18175_low_1 (Length: 983)
Name: NF18175_low_1
Description: NF18175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18175_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 29649845 - 29650290
Alignment:
| Q |
1 |
tttcaacagcatatatgttagaaatagttggcacaagtggttgaaaagtttgtggggatattgcattggtgttgttcatttgatacttaagagcatgaat |
100 |
Q |
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| T |
29649845 |
tttcaacagcatatatgttagaaatagttgggacaagtggttgaaaagtttgtggggatattgcattggtgttgttcatttgatacttaagagcatgaat |
29649944 |
T |
|
| Q |
101 |
ttttgagagttggactaatttattgtgtttctcttcaagagaaatgtttttgggaaagagcaatgaatcaaagtttactcgtgggattaatttcattgag |
200 |
Q |
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| T |
29649945 |
ttttgagagttggactaatctattgtgtttctcttcaagagaaatgtttttgggaaagagaattgaatcaaagtttactcgtgggattaatttcattgag |
29650044 |
T |
|
| Q |
201 |
aaagacatggttcctatgggaatgtagacacaaaataacacaaagagtgttaagaaactaaatgaagaagccattttcattatatgatcaatgtgctttt |
300 |
Q |
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| T |
29650045 |
aaagacatggttcctatgggaatgtagacacaaaataacacaaagagtgttaagaaactaaatgaagaagccatttttattatatgatcaatgtgctttt |
29650144 |
T |
|
| Q |
301 |
gtgttatgtttgttaggattgtgaagcaaactagctcttttatacacacacacatggctagggtttcatactcttaattatgtgacattgacattaaact |
400 |
Q |
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| T |
29650145 |
gtgttatgtttgttaggattgtgaagcaaactagctcttttatacacacacacatggctagggtttcatactcttaattatgtgacattgacattaaact |
29650244 |
T |
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| Q |
401 |
aacaccactttttcttaaattcatttgactctctctttctatttct |
446 |
Q |
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| T |
29650245 |
aacaccactttttcttaaattcatttgactctctctttctatttct |
29650290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 629 - 953
Target Start/End: Original strand, 29650442 - 29650766
Alignment:
| Q |
629 |
gctatattctattaatctcatatatctcttttgagttcattagaataaattaaggtatgaacaaattcaattttgagaagaaacaaaacctgacgaaatg |
728 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29650442 |
gctatattctattaatctcagatatctcttttgagttcattagaataaattaaggtgtgaacaaattcaattttgtgaagaaacaaaacctgacgaaatg |
29650541 |
T |
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| Q |
729 |
tgaacataaggaattcaaagcaaggcaagggtcccaatagaaataactcctgcttgcattcggaaaagattttatgttttcattttctaaaatttagttt |
828 |
Q |
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| T |
29650542 |
tgaacataagaaattcaaagcaaggcaagggtcccaatagaaataactcctgcttgcattcggaaaagattttatgttttcattttctaaaatttagttt |
29650641 |
T |
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| Q |
829 |
cttttaaatgctagcacatggaagacttatgcagtgaaaaactgtgatagagagcagatgtaattcattttcgtaaacaatggaaaagatgctttgaaat |
928 |
Q |
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| T |
29650642 |
cttttaaatgctaacacatggaagacttatgcagttaaaaactgtgatagagagcagatgtaattcattttcgtaaacaatggaaaagatgctttgaaat |
29650741 |
T |
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| Q |
929 |
ttcaaattttttgtgagtgtatata |
953 |
Q |
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| T |
29650742 |
ttcaaattttttgtgtgtgtatata |
29650766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 477 - 530
Target Start/End: Original strand, 29650290 - 29650343
Alignment:
| Q |
477 |
tgtttaacaacttcaactttctcacgttataatggttcacattcaagcactgcc |
530 |
Q |
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| T |
29650290 |
tgtttaacaacttcaactttctcacgttataatggttcacattcaagcactgcc |
29650343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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