View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18175_low_13 (Length: 238)

Name: NF18175_low_13
Description: NF18175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18175_low_13
NF18175_low_13
[»] chr1 (1 HSPs)
chr1 (18-237)||(36314645-36314864)
[»] chr8 (19 HSPs)
chr8 (18-238)||(19390487-19390707)
chr8 (18-234)||(19345073-19345289)
chr8 (18-238)||(19337357-19337577)
chr8 (18-234)||(19504054-19504270)
chr8 (35-234)||(19410701-19410900)
chr8 (35-234)||(19457720-19457919)
chr8 (35-234)||(19523159-19523358)
chr8 (24-238)||(19355383-19355597)
chr8 (27-212)||(19468610-19468795)
chr8 (27-212)||(19555531-19555716)
chr8 (35-234)||(19469524-19469723)
chr8 (35-234)||(19540448-19540647)
chr8 (35-234)||(19592051-19592250)
chr8 (24-230)||(19376527-19376733)
chr8 (18-225)||(19287618-19287825)
chr8 (27-225)||(19172821-19173019)
chr8 (27-212)||(19404661-19404846)
chr8 (67-200)||(19370913-19371046)
chr8 (67-200)||(19341133-19341266)
[»] chr6 (1 HSPs)
chr6 (24-225)||(19542976-19543177)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 36314864 - 36314645
Alignment:
Q  18 gctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaactt 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36314864 gctacaaacgtcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcgggaaagtgtattggaaaagtggaaaactt 36314765  T
Q  118 aaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaag 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314764 aaaagcaatggaatgttcgagaacattccagtgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaag 36314665  T
Q  218 ttaaagatgggaagtttata 237  Q
    ||||||||||||||||||||    
T  36314664 ttaaagatgggaagtttata 36314645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 19390487 - 19390707
Alignment:
Q  18 gctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaactt 117  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  19390487 gctaccaactccaggtgaatttagtcttgaatgggaaccaaaacaaggggaattgaacatcaagaaacgcggcaaagtgtattggaaaagcggaaaactt 19390586  T
Q  118 aaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaag 217  Q
    |||||||||||  | ||||||||||||||  |||||||||||| ||| ||||| ||||||||||| ||||||||| ||||||||||||| ||||| ||||    
T  19390587 aaaagcaatggtttattcgagaacattccggtgaatgttcaacgtatatatcaatacattattgtctctaacaaggatgaagattcttttgctttcgaag 19390686  T
Q  218 ttaaagatgggaagtttatac 238  Q
    |||||||||||||||||||||    
T  19390687 ttaaagatgggaagtttatac 19390707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 19345073 - 19345289
Alignment:
Q  18 gctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaactt 117  Q
    ||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| || |||||||||||| |||||||||    
T  19345073 gctaccaactccaggtgaatttagtcttgaatgggaaccaaaagaaggtgaattgaacatcaagaaaagcggcatagcgtattggaaaagcggaaaactt 19345172  T
Q  118 aaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaag 217  Q
    || ||||||||||| |||||||||||||| | ||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  19345173 aatagcaatggaatattcgagaacattcccacgaaagttcaacgtatatatcagtacattattgtctctaacaagaatgaagattctttcgctttcgaag 19345272  T
Q  218 ttaaagatgggaagttt 234  Q
    |||||||||||||||||    
T  19345273 ttaaagatgggaagttt 19345289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 19337357 - 19337577
Alignment:
Q  18 gctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaactt 117  Q
    ||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||  ||| | ||||||||| |||||||||||||||||||     
T  19337357 gctaccaactccaggtgaacttagtcttgaatgggaaccaaaagaaggtgaattgaacatcaggaaaagtggcaaagtgcattggaaaagtggaaaactc 19337456  T
Q  118 aaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaag 217  Q
    |||||||||||||||||||||||||||||   ||| ||||||| ||| || |||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  19337457 aaaagcaatggaatgttcgagaacattcctgcgaaagttcaacgtatataccagtacattattgtgtctaacaaggatgaagattcttttgcttttgaag 19337556  T
Q  218 ttaaagatgggaagtttatac 238  Q
    ||||||||||||| |||||||    
T  19337557 ttaaagatgggaaatttatac 19337577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 19504270 - 19504054
Alignment:
Q  18 gctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaactt 117  Q
    ||||| |||| ||||| |||||||||||| ||||||||||||| || ||||||||||||| |  ||| ||||||||||| |||||||||| |||||||||    
T  19504270 gctaccaactccaggtaaatttagtcttgtatgggaaccaaaagaacgtgaattgaacataaggaaaagcggcaaagtgcattggaaaagcggaaaactt 19504171  T
Q  118 aaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaag 217  Q
    |||||||||||||| |||||||||||||| |  || ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  19504170 aaaagcaatggaatattcgagaacattcccacaaaagttcaacgtatatatcagtacattattgtctctaacaagaatgaagattctttcgctttcgaag 19504071  T
Q  218 ttaaagatgggaagttt 234  Q
    |||||||||||||||||    
T  19504070 ttaaagatgggaagttt 19504054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 19410701 - 19410900
Alignment:
Q  35 aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt 134  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | ||    
T  19410701 aatttaatcttgaatgggaaccaaaacaaggtgaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt 19410800  T
Q  135 cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 234  Q
    |||||| |||||    |||||||||  || |||||||||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19410801 cgagaatattccggccaatgttcaaagtaggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19410900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 19457720 - 19457919
Alignment:
Q  35 aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt 134  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | ||    
T  19457720 aatttaatcttgaatgggaaccaaaacaaggtgaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt 19457819  T
Q  135 cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 234  Q
    |||||| |||||    |||||||||  || |||||||||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19457820 cgagaatattccggccaatgttcaaagtaggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19457919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 19523358 - 19523159
Alignment:
Q  35 aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt 134  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | ||    
T  19523358 aatttaatcttgaatgggaaccaaaacaaggtgaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt 19523259  T
Q  135 cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 234  Q
    |||||| |||||    |||||||||  || |||||||||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19523258 cgagaatattccggccaatgttcaaagtaggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19523159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 19355383 - 19355597
Alignment:
Q  24 aacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagc 123  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |  ||| ||||||||||| |||||||||| |||||||||| |||     
T  19355383 aacttcaggtgaatttagtcttgaatgggaaccaaaagaaggtgaattgaacataaggaaaagcggcaaagtgcattggaaaagcggaaaacttagaagt 19355482  T
Q  124 aatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaag 223  Q
    |||||||| |||||||||||||||  ||| ||||||  ||| |||| |||||||||||| ||||||||| ||||||||||||| ||||| |||||||| |    
T  19355483 aatggaatattcgagaacattccagcgaaagttcaaagtatatatcggtacattattgtgtctaacaaggatgaagattcttttgctttcgaagttaatg 19355582  T
Q  224 atgggaagtttatac 238  Q
    ||||||| |||||||    
T  19355583 atgggaattttatac 19355597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 19468795 - 19468610
Alignment:
Q  27 ttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaat 126  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  19468795 ttcaggtgaatttaatctagattgggaaccaaaacaaggtgaattgatcatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaat 19468696  T
Q  127 ggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttt 212  Q
    ||| | |||||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||  | |||||||||||| ||||    
T  19468695 ggattattcgagaatattccggtgaatgttcaacatatgtatcagtacattattgtctctaacaaagacgaagattctttcacttt 19468610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 19555716 - 19555531
Alignment:
Q  27 ttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaat 126  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  19555716 ttcaggtgaatttaatctagattgggaaccaaaacaaggtgaattgatcatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaat 19555617  T
Q  127 ggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttt 212  Q
    ||| | |||||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||  | |||||||||||| ||||    
T  19555616 ggattattcgagaatattccggtgaatgttcaacatatgtatcagtacattattgtctctaacaaagacgaagattctttcacttt 19555531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 19469723 - 19469524
Alignment:
Q  35 aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt 134  Q
    |||||| ||||||||||| ||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | ||    
T  19469723 aatttaatcttgaatggggaccaaaagaaggagaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt 19469624  T
Q  135 cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 234  Q
    |||||| |||||    ||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19469623 cgagaatattccggccaatgttcaaaataggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19469524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 19540647 - 19540448
Alignment:
Q  35 aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt 134  Q
    |||||| ||||||||||| ||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | ||    
T  19540647 aatttaatcttgaatggggaccaaaagaaggagaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt 19540548  T
Q  135 cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 234  Q
    |||||| |||||    ||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19540547 cgagaatattccggccaatgttcaaaataggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19540448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 19592051 - 19592250
Alignment:
Q  35 aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt 134  Q
    |||||| ||||||||||| ||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | ||    
T  19592051 aatttaatcttgaatggggaccaaaagaaggagaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt 19592150  T
Q  135 cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 234  Q
    |||||| |||||    ||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19592151 cgagaatattccggccaatgttcaaaataggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19592250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 230
Target Start/End: Original strand, 19376527 - 19376733
Alignment:
Q  24 aacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagc 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  19376527 aacttcaggtgaatttagtcttgagtgggaaccaaaacaaggtgaactgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagc 19376626  T
Q  124 aatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaag 223  Q
    |||||| | |||||||| |||||    ||||||||| ||||||||| |||||| ||||| ||||||||| |||||||||| ||   ||||||| ||||||    
T  19376627 aatggattattcgagaatattccggccaatgttcaaaatatgtatcggtacatcattgtctctaacaaggatgaagattcctttagttttgaaattaaag 19376726  T
Q  224 atgggaa 230  Q
    || ||||    
T  19376727 atcggaa 19376733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 19287618 - 19287825
Alignment:
Q  18 gctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaactt 117  Q
    ||||| || |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||||||||| ||||||| |    
T  19287618 gctaccaaattcaggtggatttagtcttgaatgggaacctaaagaaggtgaattgaacatcaagcaacgcggcaaagtgtattggaaaagcggaaaacgt 19287717  T
Q  118 aaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaag 217  Q
    | | |||||||  | ||||||||||||||| |||| ||||||| | ||||||| ||||||||||| ||||||||| ||||||| || ||| |||| |||     
T  19287718 agacgcaatggtttattcgagaacattccagtgaaagttcaacgtgtgtatcaatacattattgtctctaacaaggatgaagactccttcactttcgaaa 19287817  T
Q  218 ttaaagat 225  Q
    | ||||||    
T  19287818 tcaaagat 19287825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 19173019 - 19172821
Alignment:
Q  27 ttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaat 126  Q
    |||||||| ||||||| |||||||||||||||   |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||    
T  19173019 ttcaggtggatttagtgttgaatgggaaccaatggaaggtgaattgaacatcaagcaacgcggcaaagtgtattggaaaagcggaaaacttaacagcaat 19172920  T
Q  127 ggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat 225  Q
    ||| | ||| ||||||||| | |||| ||||||||| ||||||| ||||||||||| ||||||||| ||||||| || ||| |||| ||| | ||||||    
T  19172919 ggattattcaagaacattctagtgaaagttcaacatgtgtatcaatacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 19172821  T

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Target: chr8; HSP #17
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 212
Target Start/End: Original strand, 19404661 - 19404846
Alignment:
Q  27 ttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaat 126  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||| ||||||||||||||| ||    
T  19404661 ttcaggtaaatttagtcttgagtgggaaccaaaacaaggtgaactgaacatcaagaaaagaggcaaagtgtattggaaaagcggaaaacttaaaagcgat 19404760  T
Q  127 ggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttt 212  Q
    ||| | |||||||| |||||    |||||||||  ||||||||| |||| |||||| ||||||||| |||||||||||||| ||||    
T  19404761 ggattattcgagaatattccggccaatgttcaaactatgtatcaatacactattgtctctaacaaggatgaagattctttcacttt 19404846  T

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Target: chr8; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 19370913 - 19371046
Alignment:
Q  67 gaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgt 166  Q
    ||||||||||| || ||||  ||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||  |||||| |||||| |||    
T  19370913 gaattgaacattaagaaacaaggcaaagtgcattggaaaagtggaaaacttagaagcaatggattattcgagaacattccagagaatgtccaacatgtgt 19371012  T
Q  167 atcagtacattattgtttctaacaagaatgaaga 200  Q
    |||  ||||| ||||| ||||||||  |||||||    
T  19371013 atcgatacatgattgtctctaacaaagatgaaga 19371046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 19341133 - 19341266
Alignment:
Q  67 gaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgt 166  Q
    ||||||||||| || ||||  ||||||||| ||||||||||||||||||||  |||||||||| | ||||||||||||| |  |||||| |||||| |||    
T  19341133 gaattgaacattaagaaacaaggcaaagtgcattggaaaagtggaaaacttggaagcaatggattattcgagaacattctagagaatgtccaacatgtgt 19341232  T
Q  167 atcagtacattattgtttctaacaagaatgaaga 200  Q
    |||  ||||| ||||| ||||||||  |||||||    
T  19341233 atcgatacatgattgtctctaacaaagatgaaga 19341266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 19542976 - 19543177
Alignment:
Q  24 aacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagc 123  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||| | ||||| ||| |||||||||||||||||||||| |||||||||| |||     
T  19542976 aacttcaggtgaatttagtcttgaatgggaaccaaagcaacgtgaattggaaatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttagaaga 19543075  T
Q  124 aatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaag 223  Q
    |||||  | |||| |||||| ||   ||||||||||| | ||||| | ||||||||||||||||| ||  |||||||||| ||  ||||| || ||||||    
T  19543076 aatgggttattcgtgaacataccggcgaatgttcaacgtgtgtatgaatacattattgtttctaagaaagatgaagattcctttacttttaaaattaaag 19543175  T
Q  224 at 225  Q
    ||    
T  19543176 at 19543177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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