View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18175_low_3 (Length: 431)
Name: NF18175_low_3
Description: NF18175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18175_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 21 - 415
Target Start/End: Complemental strand, 12876161 - 12875767
Alignment:
| Q |
21 |
agcacaagtatggatttaccagcagagaagccggttcgttcaaggccttcataagcagtctcaattgtcaaaggaagactagcagcctcagcaaagctca |
120 |
Q |
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| T |
12876161 |
agcacaagtatggatttaccagcagagaagccggttcgttcaaggccttcataagcagtctcaattgtcaaaggaagactagcagcctcagcaaagctca |
12876062 |
T |
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| Q |
121 |
gattttttggcttgtgagccaacagtatctcttctgcagcagtgtactccgccagtgaaccaatgacctttggatattccaaagctttcacattgatatc |
220 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12876061 |
gatttttcggcttgtgagccaacagtatctcttctgcagcagtgtactctgccagtgaaccaatgacctttggatattccaaagctttcacattgatatc |
12875962 |
T |
|
| Q |
221 |
accataaacttcatccccaaccttaaacttcttcacttcactccctaccttaaccacaactccagatacatcatatcctggtgcagtctagatcagaccc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12875961 |
accataaacttcatccccaaccttaaacttcttcacttcactccctaccttaaccacaactccagatacatcatatcctggtgcagtctagatcagaccc |
12875862 |
T |
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| Q |
321 |
acaacccaacagagagagattagttgtggattaataatttataatgagattaatttctatacacggacactgtaaaactttttacatatgcatcg |
415 |
Q |
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| T |
12875861 |
acagcccaacagagagagattagttgtggattaataatttataatgagattaatttctatacacgggcactgtaaaactttttacatatgcatcg |
12875767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 3603338 - 3603436
Alignment:
| Q |
211 |
cattgatatcaccataaacttcatccccaaccttaaacttcttcactt-cactccctaccttaaccacaactccagatacatcatatcctggtgcagtct |
309 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||| | ||||| || ||||||| || |||| ||||||||||||||| |||||| |
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| T |
3603338 |
cattgatatcaccataaacttcatctccaaccttaaatttcttcacttgctctccc-acactaaccaccacaccagcaacatcatatcctggtacagtct |
3603436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 3599166 - 3599256
Alignment:
| Q |
211 |
cattgatatcaccataaacttcatccccaaccttaaacttcttcac-ttcactccctaccttaaccacaactccagatacatcatatcctgg |
301 |
Q |
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||||||||||||||||||||||||| ||||||||||| || ||||| ||| ||||| || |||||||||| |||| |||||||||||||| |
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| T |
3599166 |
cattgatatcaccataaacttcatctccaaccttaaatttattcactttctctccc-acactaaccacaacaccagcaacatcatatcctgg |
3599256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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