View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18175_low_4 (Length: 413)
Name: NF18175_low_4
Description: NF18175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18175_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 269 - 405
Target Start/End: Complemental strand, 22080583 - 22080447
Alignment:
| Q |
269 |
gtgaacaacatttcaatagatcggttttccttcttgcattaaatcaatttttcgaactaaaattgtttcagaagtcattttaatcaaagacatatcaaag |
368 |
Q |
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| T |
22080583 |
gtgaacaacacttaaatagatcggttttccttcttgcattaaatcagtttttcgaactaaaattgtttgagaagtcattttaatgaaagacgtatcaaag |
22080484 |
T |
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| Q |
369 |
atctattgaactgcatttctattttgtttttgatgat |
405 |
Q |
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| T |
22080483 |
atctattgaactgcatttctgttttgtatttgatgat |
22080447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 22080829 - 22080708
Alignment:
| Q |
49 |
tcatcttgctatttttccattttattttcgatttcacagctcaagcatttattaattcaatctcattttgttccgnnnnnnnncttcccatttttcagtt |
148 |
Q |
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| T |
22080829 |
tcatctttctatttttccattttattttcgatttcacagctcaagcatttattaattgaatctcattttgttccgttttt----ttcccatttttcaggt |
22080734 |
T |
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| Q |
149 |
tccttcaagcattcttcatcctggta |
174 |
Q |
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|||||||||||||||||||||||||| |
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| T |
22080733 |
tccttcaagcattcttcatcctggta |
22080708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 1521980 - 1522017
Alignment:
| Q |
137 |
catttttcagtttccttcaagcattcttcatcctggta |
174 |
Q |
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| T |
1521980 |
cattttgcaggttccttcaagcattcttcatcctggta |
1522017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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