View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18175_low_6 (Length: 392)
Name: NF18175_low_6
Description: NF18175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18175_low_6 |
 | |
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| [»] scaffold0286 (1 HSPs) |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 46 - 377
Target Start/End: Original strand, 2162128 - 2162459
Alignment:
| Q |
46 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
145 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2162128 |
tcaaaagaagacatcatttgatccatccaagaaattgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
2162227 |
T |
|
| Q |
146 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttg |
245 |
Q |
| |
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||||||||||||||||||| |||||||| |||| | |||| |||||||||| |||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
2162228 |
atagggtactatgacagctacaaaaacaagaacgcacagtttgatcatgatgttgttgtatttcataaaatactcacaaattattgggaaaagatggttg |
2162327 |
T |
|
| Q |
246 |
aagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagttat |
345 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2162328 |
aagaagctgaactgaaacctcaaagagaaggcgctgcatttcgtaatcgctggctcttcggtggaactacatatagaagaatggttgaaccactagctat |
2162427 |
T |
|
| Q |
346 |
tgctcaatactatagagatggtggtaaagatt |
377 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
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|
| T |
2162428 |
tgctcagtactatagagatggtggtaaagatt |
2162459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 46 - 377
Target Start/End: Original strand, 2168291 - 2168622
Alignment:
| Q |
46 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
145 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
2168291 |
tcaaaagaagacatcatttgatccatccaagaaactgaatgaaatgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgac |
2168390 |
T |
|
| Q |
146 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagc-tcacaatttattgggaaaagatggtt |
244 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||| ||||| ||| |||| | | | |||||||| ||| | ||| |||||||||||||||| |
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|
| T |
2168391 |
atagggtactatgacagctacaaaaacaagaacgtatcagctgattatgaagttgattggtatt-taaaaagcatcatatttttttgggaaaagatggtt |
2168489 |
T |
|
| Q |
245 |
gaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagtta |
344 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2168490 |
gaagaagctgatctgaagcctcaaagagaaggcgctgcatttcgtactcgctggatcttcggtggaactacatatagaagaatggttgaaccactagcta |
2168589 |
T |
|
| Q |
345 |
ttgctcaatactatagagatggtggtaaagatt |
377 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
2168590 |
ttgctcaatactatagagacggtggtaaagatt |
2168622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 46 - 377
Target Start/End: Original strand, 2179924 - 2180255
Alignment:
| Q |
46 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
145 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
2179924 |
tcaaaagaagacatcatttgatccatccaagaaactgaatgaaatgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgac |
2180023 |
T |
|
| Q |
146 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagc-tcacaatttattgggaaaagatggtt |
244 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||| ||||| ||| |||| | | | |||||||| ||| | ||| |||||||||||||||| |
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|
| T |
2180024 |
atagggtactatgacagctacaaaaacaagaacgtatcagctgattatgaagttgattggtatt-taaaaagcatcatatttttttgggaaaagatggtt |
2180122 |
T |
|
| Q |
245 |
gaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagtta |
344 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2180123 |
gaagaagctgatctgaagcctcaaagagaaggcgctgcatttcgtactcgctggatcttcggtggaactacatatagaagaatggttgaaccactagcta |
2180222 |
T |
|
| Q |
345 |
ttgctcaatactatagagatggtggtaaagatt |
377 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
2180223 |
ttgctcaatactatagagacggtggtaaagatt |
2180255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 46 - 377
Target Start/End: Original strand, 2207160 - 2207491
Alignment:
| Q |
46 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
145 |
Q |
| |
|
||||||||||| || |||| ||||||| || |||| ||||||||||||| || ||| || ||| ||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2207160 |
tcaaaagaagatatcatttaatccatcaaataaacagaatgaaatgaagggatgtatagcacaagttgaatggtacaaaaagaaaacaacaaatcttgac |
2207259 |
T |
|
| Q |
146 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttg |
245 |
Q |
| |
|
||||||||||||||||| | |||||||||| || | ||||||| |||||||||| | ||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
2207260 |
atagggtactatgacagttacaaaaacatgtacgaaatatctgattatgatgttgttgagtttcataaaaagctcacaagttattgggagaagatggttg |
2207359 |
T |
|
| Q |
246 |
aagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagttat |
345 |
Q |
| |
|
|||| | |||| |||||||| ||| |||||| || |||| | | ||||| | ||||||| || ||||||||||||||||||||| ||| ||| |
|
|
| T |
2207360 |
aagacgttgaaatgaagcctaaaaaagaaggtgccttttttcctacttgttggctatatggtggaattatttatagaagaatggttgaaccattagctat |
2207459 |
T |
|
| Q |
346 |
tgctcaatactatagagatggtggtaaagatt |
377 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||| |
|
|
| T |
2207460 |
tgctcaatactacaaagaaggtggtaaagatt |
2207491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 46 - 377
Target Start/End: Complemental strand, 14978 - 14646
Alignment:
| Q |
46 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaat-gaaaacaaaaaat-cttg |
143 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
14978 |
tcaaaagaagacatcatttgatccatccaagaaattgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatagaaaacaaaaaatacttg |
14879 |
T |
|
| Q |
144 |
acatagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggt |
243 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| | |||| |||||||||| |||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
14878 |
acatagggtactatgacagctacaaaaacaagaacgcacagtttgatcatgatgttgttgtatttcataaaatactcacaaattattgggaaa-gatggt |
14780 |
T |
|
| Q |
244 |
tgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagtt |
343 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14779 |
tgaagaagctgaactgaaacctcaaagagaaggcgctgcatttcgtaatcgctggctcttcggtggaactacatatagaagaatggttgaaccactagct |
14680 |
T |
|
| Q |
344 |
attgctcaatactatagagatggtggtaaagatt |
377 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
14679 |
attgctcagtactatagagatggtggtaaagatt |
14646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 46 - 377
Target Start/End: Complemental strand, 2408 - 2075
Alignment:
| Q |
46 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
145 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2408 |
tcaaaagaagacatcatttgatccatccaagaaactgaatgaaatgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgac |
2309 |
T |
|
| Q |
146 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagc-tcacaatttatt-gggaaaagatggt |
243 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||| ||||| ||| |||| | | |||||||| ||| |||| || ||||||||||||| |
|
|
| T |
2308 |
atagggtactatgacagctacaaaaacaagaacgtatcagctgattatgaagttgattggtaatttaaaaagcatcattatttttttgggaaaagatggt |
2209 |
T |
|
| Q |
244 |
tgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcggtggaactacatatagaagaatggttgaaccactagtt |
343 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2208 |
tgaagaagctgatctgaagcctcaaagagaaggcgctgcatttcgtactcgctggctcttcggtggaactacatatagaagaatggttgaaccactagct |
2109 |
T |
|
| Q |
344 |
attgctcaatactatagagatggtggtaaagatt |
377 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
2108 |
attgctcaatactatagagacggtggtaaagatt |
2075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 27781522 - 27781362
Alignment:
| Q |
19 |
aaaaagactagaagaactatccatccatcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatgg |
118 |
Q |
| |
|
||||| ||| |||||| ||| |||||| || ||||||| || ||| |||||||||||||| ||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
27781522 |
aaaaaaactcgaagaaatattcatccaccagaagaagatatcgttttatccatccaagaaattgaatgacgtgaaggtacatatggcccaacttgaatgg |
27781423 |
T |
|
| Q |
119 |
tacaaaatgaaaacaaaaaatcttgacatagggtactatgacagcttcaaaaacatgaaca |
179 |
Q |
| |
|
| ||||||| ||| || |||| | ||||||||||||||||||| |||||| ||||||| |
|
|
| T |
27781422 |
ttcaaaatggcaactaagaatcaacaaatagggtactatgacagctacaaaaatatgaaca |
27781362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 289
Target Start/End: Complemental strand, 27785379 - 27785152
Alignment:
| Q |
62 |
tttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgaca |
161 |
Q |
| |
|
||||||||||| ||||| ||||||| | |||| ||||||| ||||||||||||||||||| |||| | || ||| | |||||||| ||||||| |
|
|
| T |
27785379 |
tttgatccatcaaagaagttgaatgacaggaaggtggatatggcccaacttgaatggtacaaaaagaaatctaagaatgaacaaatagggtattatgaca |
27785280 |
T |
|
| Q |
162 |
gcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttgaagaagctgaactgaa |
261 |
Q |
| |
|
||||||||||||||||| | ||| ||||||| | | || ||||||| |||||| |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
27785279 |
gcttcaaaaacatgaactttcccgatgactatgatgttaatcaattccataaaaggctcaccttttattgggagaagatggttgaagaagctgagatgaa |
27785180 |
T |
|
| Q |
262 |
gcctcaaagagaaggcgctgcgtttcgt |
289 |
Q |
| |
|
|||||||| |||||| || || |||||| |
|
|
| T |
27785179 |
gcctcaaaaagaaggtgcagcttttcgt |
27785152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 19488225 - 19488151
Alignment:
| Q |
193 |
tgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttgaagaagctgaactgaagcctcaa |
268 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||||| |
|
|
| T |
19488225 |
tgatgttgttgagtttcataaaaagctcacaatttattgggaaaa-atagttgaagaagttgaaatgaagcctcaa |
19488151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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