View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18176_high_11 (Length: 415)

Name: NF18176_high_11
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18176_high_11
NF18176_high_11
[»] chr6 (12 HSPs)
chr6 (158-405)||(28017820-28018060)
chr6 (158-402)||(27917175-27917412)
chr6 (130-342)||(28047437-28047640)
chr6 (193-348)||(28074634-28074786)
chr6 (129-353)||(28035542-28035757)
chr6 (1-92)||(28017682-28017773)
chr6 (177-336)||(28091631-28091784)
chr6 (169-243)||(27922091-27922165)
chr6 (336-402)||(28001682-28001748)
chr6 (37-92)||(28035449-28035504)
chr6 (169-336)||(28018603-28018767)
chr6 (213-277)||(28534354-28534418)
[»] chr5 (1 HSPs)
chr5 (170-342)||(1440036-1440205)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 158 - 405
Target Start/End: Original strand, 28017820 - 28018060
Alignment:
Q  158 taatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagata 257  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||    
T  28017820 taatatctattatcaaaaccatgtctctgacatcatgatttg-ttgttgtgttatgttaggtatcaatcaccttattggagatcacttgcagcaaaggta 28017918  T
Q  258 attcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattcattccttcc 357  Q
    |||||||||||||||||| |||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||    |||||||||||| ||    
T  28017919 attcaggatgcatggagaaacatgaagaagtgtctaattcaagc---taatgccacacaaaatgattatcaaacattgagg----tcattcattcctccc 28018011  T
Q  358 atttctttgttgtca-ttctgttcatattcagcatgtcttcaccctatg 405  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  28018012 atttctttgttgtcatttctgttgatattcagcatgtcttcaccctatg 28018060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 158 - 402
Target Start/End: Original strand, 27917175 - 27917412
Alignment:
Q  158 taatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagata 257  Q
    |||||||| | |||| ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||| || |    
T  27917175 taatatctcttatcataactatgtctctgacatcatgatatggttgttgtgttatgttaggtatgaatcaccttattggagatcccttgcagcaacgaga 27917274  T
Q  258 attcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattcattccttcc 357  Q
    ||||||| |||||||||||||| ||||||| ||||||  | |||    |||||||||||||||||||||||||||||||||    |||||||||||||||    
T  27917275 attcaggttgcatggagatacaggaagaagcgtctaaggccagc---aaataccacacaaaatgattatcaaacattgagg----tcattcattccttcc 27917367  T
Q  358 atttctttgttgtcattctgttcatattcagcatgtcttcaccct 402  Q
    ||||| |||||||| ||||||  ||||||||||||||||||||||    
T  27917368 atttccttgttgtctttctgtcgatattcagcatgtcttcaccct 27917412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 130 - 342
Target Start/End: Original strand, 28047437 - 28047640
Alignment:
Q  130 acaagtgtgttatatacatgcctaatagtaatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcacc 229  Q
    ||||||||||||| |||||||||||||      ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  28047437 acaagtgtgttatttacatgcctaata------tctattatcaaaaccatgtctctgacatcatgatttggttgttgtgttatgttaggtatcaatcacc 28047530  T
Q  230 ttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaa 329  Q
    |||||||||||||| ||||||||| | |||||||| ||||||||||  || ||||||| ||||||  | |||   |||||||||||||||| ||||||||    
T  28047531 ttattggagatcacttgcagcaaacagaattcaggttgcatggagaagcaggaagaagcgtctaagacgagc---taataccacacaaaattattatcaa 28047627  T
Q  330 acattgaggtcat 342  Q
    |||||||||||||    
T  28047628 acattgaggtcat 28047640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 193 - 348
Target Start/End: Original strand, 28074634 - 28074786
Alignment:
Q  193 tgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtct 292  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  | ||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  28074634 tgatttggttgttgtgttatgttaggtatgaatcaccttattggagattccttgcagcaaaaagaattcaggatgcatggagaaacatgaagaagtgtct 28074733  T
Q  293 aattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattc 348  Q
    || ||||||   |||||||||||||||||||||||||||||| |||||||||||||    
T  28074734 aagtcaagc---taataccacacaaaatgattatcaaacattaaggtcattcattc 28074786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 129 - 353
Target Start/End: Original strand, 28035542 - 28035757
Alignment:
Q  129 tacaagtgtgttatatacatgcctaatagtaatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcac 228  Q
    |||||||||||||| |||||||||||||      | ||  |||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||    
T  28035542 tacaagtgtgttatttacatgcctaata------tatagtatcaaaaccatggctctgacatcatgatttggttgttgtgtcatgttaggtatcaatcac 28035635  T
Q  229 cttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatca 328  Q
    ||||||||||||||| ||||||||| | |||||||| |||||||||  | | ||||||| |||||| ||||||   |||||||||||||||| |||||||    
T  28035636 cttattggagatcacttgcagcaaacagaattcaggttgcatggagcaataggaagaagcgtctaagtcaagc---taataccacacaaaataattatca 28035732  T
Q  329 aacattgaggtcattcattcattcc 353  Q
    ||||| | |||||||||||| ||||    
T  28035733 aacatcgtggtcattcattccttcc 28035757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 28017682 - 28017773
Alignment:
Q  1 ctacctataccacttatatatgcattgtccgcaactaatatggaactcttaacaatttgtgtatctgatacaaaaccatcatttttctatat 92  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28017682 ctacctataccacttatatatacattgtcctcaactaatatggaactcttaacaatttttgtatctgatacaaaaccatcatttttctatat 28017773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 336
Target Start/End: Original strand, 28091631 - 28091784
Alignment:
Q  177 catgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagat 276  Q
    |||| ||||||||| ||||||||||| |   |||| ||||||||||||||| |||| |||||||||| ||||||||| | ||||| || |||||||||||    
T  28091631 catgactctgacatgatgatttggttat---gttatgttaggtatgaatcaacttactggagatcacttgcagcaaatagaattcgggttgcatggagat 28091727  T
Q  277 acatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattga 336  Q
    ||| ||||||  |||||| | ||||   ||||||||||||||||||||||||||||||||    
T  28091728 acaggaagaaacgtctaagtaaagc---taataccacacaaaatgattatcaaacattga 28091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 27922091 - 27922165
Alignment:
Q  169 atcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcac 243  Q
    |||||||||||| ||||||||| |||||||| |  |||||||| |||||||||||||| |||||| ||| |||||    
T  27922091 atcaaaaccatggctctgacataatgatttgatgattgtgttatgttaggtatgaatcgccttatgggaaatcac 27922165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 28001682 - 28001748
Alignment:
Q  336 aggtcattcattcattccttccatttctttgttgtcattctgttcatattcagcatgtcttcaccct 402  Q
    |||||||| ||| |||||||||||||| ||||| || ||||| | ||||||||||||||||||||||    
T  28001682 aggtcattaatttattccttccatttcattgttctctttctggtgatattcagcatgtcttcaccct 28001748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 28035449 - 28035504
Alignment:
Q  37 aatatggaactcttaacaatttgtgtatctgatacaaaaccatcatttttctatat 92  Q
    |||||||||||||||||||| ||  ||||||||||||| || ||||||||||||||    
T  28035449 aatatggaactcttaacaatatgcatatctgatacaaatccgtcatttttctatat 28035504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 336
Target Start/End: Original strand, 28018603 - 28018767
Alignment:
Q  169 atcaaaaccatgtctctgacatcatgatttg--gttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggat 266  Q
    |||||||||||| |||||||||  |||||||  | | |||||||| |||||||||||||| |||||| ||| ||||| |  | |||| | |||||||| |    
T  28018603 atcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttatgggaaatcacatagaccaaacagaattcaggtt 28018702  T
Q  267 gcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattga 336  Q
    |||||||||   | ||||||| ||||||  | ||||||||      ||||||||||| ||||||||||||    
T  28018703 gcatggagaagtaggaagaagcgtctaagacgagctaata-----ccacaaaatgatcatcaaacattga 28018767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 28534354 - 28534418
Alignment:
Q  213 gttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagata 277  Q
    ||||||||||||||||||||||||||||| |  |||||||    |||||||| ||||||||||||    
T  28534354 gttaggtatgaatcaccttattggagatccctagcagcaacccgaattcaggttgcatggagata 28534418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 170 - 342
Target Start/End: Original strand, 1440036 - 1440205
Alignment:
Q  170 tcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgca 269  Q
    ||||||| ||| ||||| | | |||||||||||||| || || ||||||||||||||  | ||||||||||||| ||||||||| | ||||| || ||||    
T  1440036 tcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgca 1440135  T
Q  270 tggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcat 342  Q
    |||||||||| ||||||| |||||| || |||   |||||||| ||||||||||||||||||||||| |||||    
T  1440136 tggagatacaggaagaagcgtctaagtcgagc---taataccagacaaaatgattatcaaacattgatgtcat 1440205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University