View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_high_13 (Length: 401)
Name: NF18176_high_13
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 35446999 - 35447369
Alignment:
| Q |
15 |
tcaactagagtcaaagttgctttgcacctcctatggctgatacttcttttctccggcaagaacatttaatagcaccttttgtgggaacgaagttctaaga |
114 |
Q |
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| T |
35446999 |
tcaactggagttaaagttgctttgcacctcctatggctgatacttcttttctccggcaagaacatttaatagcgccttttgtgggaacgaagttctaaga |
35447098 |
T |
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| Q |
115 |
acctcggtttcccaaatcatcttttaccttctaactaatgcnnnnnnntgtctagaagtatcatcaaaaccatagcagctaagtgatctcatatgttggc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35447099 |
acctcggtttcccaaatcatcttttaccttctaactaatgcaaaaaaatgcctagaagtatcatcaaaaccatagcagctaagtgatctcatacgttggc |
35447198 |
T |
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| Q |
215 |
gagcgtcattgttagaacatagaacagcttcatcattgcatgaaacgctagcaccaaccttttccctatcacgaacaatcattcctacgatgactcgact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35447199 |
gagcgtcattgttagaacatagaacagcttcatcattgcatgaaacgctagcaccaaccttttccctatcacgaacaatcattcctacgatgactcgact |
35447298 |
T |
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| Q |
315 |
gccacctcctgaacagaaggaagaacgcatgcaattgctcattaacacaaccaaatgacacgaggaaatcg |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
35447299 |
gccacctcctgaacagaaggaagaacgcatgcaattgctcattgacataaccaaattacacgaggaaatcg |
35447369 |
T |
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