View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_high_14 (Length: 376)
Name: NF18176_high_14
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 3609032 - 3609407
Alignment:
| Q |
1 |
ttggatccaagttgttgttctgagcggatggaaacatggcactaaaaacacgtttttatcattaatcttattcttgtttttgagagtggatggaagaagt |
100 |
Q |
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| T |
3609032 |
ttggatccaagttgttgttctgagaggatggaaacatggcactaaaagcacgtttttatcattaatcttattcttgtttttgagagtggatggaagaagt |
3609131 |
T |
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| Q |
101 |
gacagaggtgtgaatttccttcccacttttgaaggcttccataaatggcagagaatggcataggccatgaggaaggttggcggatcaatgatcactcgaa |
200 |
Q |
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| T |
3609132 |
gacagaggtgtgaatttcctttccacttttgaaggcttccataaatggcagagaatggcataggccatgagaaaggttggtggatcaatgatcactcgaa |
3609231 |
T |
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| Q |
201 |
aaatcgcagtgaaatagcggcatcgtgaagatcacaaccaagctctgataccatattaagattttgagcataagaagnnnnnnngagctttataaatcaa |
300 |
Q |
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| T |
3609232 |
aaatcacagtgaaataacggcatcatgaagatcacaaccaggctctgataccatattaaaattttgagcataagaagaaaaaaagagctttataaatcaa |
3609331 |
T |
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| Q |
301 |
gtgaaagtaagatacataaaaaattatattgatcaaaagacagtgaatgagtatatgagatgctctatatatagtg |
376 |
Q |
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| T |
3609332 |
gtgaaagtaagatacataaaaaattatattgatcaaaagacgatgaatgagtatatgagatgctctatatatagtg |
3609407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 36572237 - 36572294
Alignment:
| Q |
289 |
tttataaatcaagtgaaagtaagatacataaaaaattatattgatcaaaagacagtga |
346 |
Q |
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| T |
36572237 |
tttataactcaagtgaaagtaaaatttattgaaaattatattgatcaaaagatagtga |
36572294 |
T |
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