View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_high_20 (Length: 293)
Name: NF18176_high_20
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 24619580 - 24619325
Alignment:
| Q |
1 |
aataatcaacagttaggtcgggaagttggttctgaccaatgattttttcgactaggtttcaactcggattctcttaaacgatggaagggcaaaagtgaaa |
100 |
Q |
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| T |
24619580 |
aataatcaacaatttggctgggaggttggttttgaccaatgattttttcgactaggttttaattcggattctcttaaacgatggaagggcaaaagtgaaa |
24619481 |
T |
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| Q |
101 |
taaattatcccaatattatctaaattgaatattacactaaaatcaaccaaaaagtcaaaataaataaaagtatgaatttgaactaagaactggttacatc |
200 |
Q |
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| T |
24619480 |
taaatgatcccaatattatctaaattgaatactccactaaaatcaaccaaaaagtcaagataaataaaagtatgaatttgaactaagaactggttacatc |
24619381 |
T |
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| Q |
201 |
tacagcaatcagtcaatggctaaagtttcttcatgtgaaactaaaataatgaacta |
256 |
Q |
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| T |
24619380 |
tagagcaatcaatcaatggctaaagtttcttcatgtgaaactaaaataatgaacta |
24619325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 29051074 - 29051174
Alignment:
| Q |
150 |
aaaagtcaaaataaataaaagtatgaatttgaactaagaactggttacatctacagcaatcagtcaatggctaaagtttcttcatgtgaaactaaaataa |
249 |
Q |
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| T |
29051074 |
aaaagccaagataaataaaagtatgaatttgaactaagaagtggttacttctatagcaatcagtcaatggctaaagttttttcatatgaaactaaaataa |
29051173 |
T |
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| Q |
250 |
t |
250 |
Q |
| |
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| T |
29051174 |
t |
29051174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 1345072 - 1344916
Alignment:
| Q |
31 |
tctgaccaatgattttttcgactaggtttcaactcggattctcttaaacgatggaagggcaaaagtgaaataaattatcccaatattatctaaattgaat |
130 |
Q |
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|||||||||||||| || ||| ||| || ||| ||||| |||||| ||||||| ||| ||||||||| |||| ||||| || ||||||||||||||| |
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| T |
1345072 |
tctgaccaatgattattccgattagattcgtactaggattttcttaatcgatggatgggaaaaagtgaattaaaagatccctatgttatctaaattgaat |
1344973 |
T |
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| Q |
131 |
attacactaaaatcaaccaaaaagtcaaaataaataaaagtatgaatttgaactaagaa |
189 |
Q |
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||| ||||||||| |||| ||||| ||| |||||||||| ||||||||| ||||||||| |
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| T |
1344972 |
attccactaaaataaacc-aaaagccaagataaataaaaatatgaattt-aactaagaa |
1344916 |
T |
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