View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_high_23 (Length: 261)
Name: NF18176_high_23
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 6551924 - 6551677
Alignment:
| Q |
1 |
tgtttaaagaacaaagaaaacnnnnnnngcatacctcaaaaagagctttcaacacagaatctttaacatcactatcaatatttctcacaaataatgttct |
100 |
Q |
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| T |
6551924 |
tgtttaaagaacaaagaaaacaaaaaaagcatacctcaaaaagagctttcaacacagaatctttaacatcactatcaatatttctcacaaataatgttct |
6551825 |
T |
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| Q |
101 |
agaagggtgttcgccataagagttttctccggcgattgagctattacgaactccactgatgatttcagaattcctttcaatagaggatggattttcaacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6551824 |
agaagggtgttcgccataagagttttctccggcgattgagctattacgaactccactgatgatttcagaattcctttcaatagaggatggattttcaacg |
6551725 |
T |
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| Q |
201 |
tctccaagatcaaaacctccattgctactgaaaaggtctagttcatct |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6551724 |
tctccaagatcaaaacctccattgctactgaaaaggtctagttcatct |
6551677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 49061082 - 49061200
Alignment:
| Q |
31 |
atacctcaaaaagagctttcaacacagaatctttaacatcactatcaatatttctcacaaataatgttctagaagggtgttcgccataagagttttctcc |
130 |
Q |
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|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| | |
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| T |
49061082 |
atacctcaaaaagagctttcaattcagaatcttcaacctcactatcaatatttctcacaaataatgttctagaagggtgttcaccagaagggttttctac |
49061181 |
T |
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| Q |
131 |
ggcgattgagctattacga |
149 |
Q |
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| T |
49061182 |
ggcgaatgaggtgttacga |
49061200 |
T |
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