View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18176_high_24 (Length: 260)

Name: NF18176_high_24
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18176_high_24
NF18176_high_24
[»] chr4 (26 HSPs)
chr4 (16-207)||(10265767-10265959)
chr4 (16-210)||(10284789-10284984)
chr4 (210-260)||(32082210-32082260)
chr4 (210-260)||(31273446-31273496)
chr4 (210-260)||(37259997-37260047)
chr4 (210-260)||(37264684-37264734)
chr4 (211-260)||(8693637-8693686)
chr4 (212-260)||(55810267-55810315)
chr4 (209-260)||(12824015-12824066)
chr4 (213-260)||(31268962-31269009)
chr4 (210-260)||(31729491-31729541)
chr4 (211-260)||(19101903-19101952)
chr4 (208-260)||(33469093-33469146)
chr4 (217-260)||(23093112-23093155)
chr4 (210-259)||(8652129-8652179)
chr4 (210-259)||(8663936-8663986)
chr4 (210-260)||(12878152-12878202)
chr4 (210-260)||(19106544-19106594)
chr4 (210-260)||(32221217-32221267)
chr4 (210-252)||(55251646-55251688)
chr4 (211-260)||(5928339-5928388)
chr4 (211-252)||(16420956-16420997)
chr4 (210-257)||(13522115-13522163)
chr4 (210-260)||(5271539-5271587)
chr4 (213-256)||(51697841-51697884)
chr4 (211-260)||(8030596-8030645)
[»] chr8 (18 HSPs)
chr8 (210-260)||(40130806-40130856)
chr8 (210-260)||(1911089-1911139)
chr8 (210-260)||(18876486-18876536)
chr8 (210-260)||(31449986-31450036)
chr8 (211-260)||(33416473-33416522)
chr8 (216-260)||(4238435-4238479)
chr8 (216-260)||(4243174-4243218)
chr8 (211-260)||(19915073-19915122)
chr8 (210-260)||(2965544-2965594)
chr8 (210-260)||(17025860-17025910)
chr8 (210-260)||(17556352-17556402)
chr8 (210-260)||(34118391-34118441)
chr8 (210-260)||(38182356-38182406)
chr8 (210-243)||(40126000-40126033)
chr8 (211-259)||(43302832-43302880)
chr8 (213-244)||(28559790-28559821)
chr8 (210-244)||(15951626-15951660)
chr8 (211-257)||(44926046-44926092)
[»] chr6 (17 HSPs)
chr6 (210-260)||(6407980-6408030)
chr6 (209-260)||(8747706-8747757)
chr6 (214-260)||(17964650-17964696)
chr6 (213-260)||(12688899-12688946)
chr6 (211-260)||(11534798-11534847)
chr6 (211-260)||(11560308-11560357)
chr6 (211-260)||(19674239-19674288)
chr6 (210-260)||(22609480-22609530)
chr6 (211-244)||(33687739-33687772)
chr6 (211-260)||(2760374-2760424)
chr6 (210-260)||(15991829-15991879)
chr6 (210-260)||(15999491-15999541)
chr6 (210-256)||(25316694-25316740)
chr6 (210-256)||(26204188-26204234)
chr6 (212-244)||(12406499-12406531)
chr6 (213-260)||(20748416-20748464)
chr6 (210-260)||(21308959-21309006)
[»] chr5 (27 HSPs)
chr5 (210-260)||(39518335-39518385)
chr5 (210-260)||(556620-556670)
chr5 (210-260)||(561392-561442)
chr5 (210-260)||(41996590-41996640)
chr5 (210-260)||(42001359-42001409)
chr5 (211-256)||(10759947-10759992)
chr5 (211-260)||(29168093-29168142)
chr5 (211-260)||(37248915-37248964)
chr5 (211-260)||(37652950-37652999)
chr5 (216-260)||(36428640-36428684)
chr5 (210-260)||(39522973-39523024)
chr5 (210-260)||(6155539-6155589)
chr5 (211-260)||(12045259-12045309)
chr5 (211-260)||(12102950-12103000)
chr5 (211-260)||(37550121-37550170)
chr5 (209-260)||(12502019-12502071)
chr5 (213-260)||(36423565-36423612)
chr5 (211-260)||(3665857-3665907)
chr5 (210-256)||(35680002-35680048)
chr5 (211-260)||(7451684-7451733)
chr5 (211-260)||(26667198-26667247)
chr5 (211-260)||(26938795-26938844)
chr5 (211-260)||(41587280-41587329)
chr5 (216-260)||(11981399-11981443)
chr5 (210-260)||(6514721-6514770)
chr5 (218-260)||(40147828-40147870)
chr5 (213-257)||(12104205-12104249)
[»] chr3 (26 HSPs)
chr3 (210-260)||(3672509-3672559)
chr3 (210-260)||(3692541-3692591)
chr3 (210-260)||(7571338-7571388)
chr3 (211-260)||(29350164-29350213)
chr3 (211-260)||(39775848-39775897)
chr3 (210-260)||(23661570-23661620)
chr3 (210-260)||(23666243-23666293)
chr3 (210-260)||(24038491-24038541)
chr3 (211-260)||(8069603-8069652)
chr3 (216-260)||(758488-758532)
chr3 (210-260)||(3418917-3418968)
chr3 (213-260)||(29715570-29715617)
chr3 (210-260)||(8883093-8883143)
chr3 (210-260)||(8887853-8887903)
chr3 (210-260)||(16013643-16013693)
chr3 (214-260)||(55431242-55431288)
chr3 (211-260)||(14438815-14438864)
chr3 (211-260)||(27708803-27708851)
chr3 (216-260)||(3033573-3033617)
chr3 (213-252)||(49971552-49971591)
chr3 (210-260)||(18471931-18471981)
chr3 (210-260)||(20519977-20520027)
chr3 (211-260)||(18467149-18467198)
chr3 (210-260)||(12112773-12112823)
chr3 (213-259)||(12965994-12966040)
chr3 (211-260)||(3657360-3657409)
[»] chr2 (22 HSPs)
chr2 (210-260)||(30650854-30650904)
chr2 (211-260)||(9189923-9189972)
chr2 (211-260)||(19892586-19892635)
chr2 (211-260)||(18344357-18344406)
chr2 (211-260)||(30631505-30631554)
chr2 (217-260)||(28603230-28603273)
chr2 (210-260)||(9180844-9180894)
chr2 (210-260)||(10160844-10160894)
chr2 (210-260)||(30658188-30658238)
chr2 (211-260)||(1935113-1935162)
chr2 (211-260)||(29677694-29677742)
chr2 (211-260)||(35601848-35601897)
chr2 (211-260)||(35639117-35639166)
chr2 (211-260)||(20711358-20711408)
chr2 (210-256)||(25478425-25478471)
chr2 (210-260)||(42926881-42926930)
chr2 (211-260)||(12796851-12796900)
chr2 (211-260)||(31326665-31326714)
chr2 (210-255)||(40847735-40847780)
chr2 (211-258)||(19578548-19578595)
chr2 (211-253)||(25497456-25497498)
chr2 (211-260)||(7737971-7738020)
[»] scaffold0352 (1 HSPs)
scaffold0352 (211-260)||(7030-7079)
[»] scaffold0002 (1 HSPs)
scaffold0002 (211-260)||(4000-4049)
[»] chr7 (12 HSPs)
chr7 (210-260)||(8268218-8268268)
chr7 (211-260)||(26287290-26287339)
chr7 (211-260)||(8075975-8076025)
chr7 (213-258)||(13314358-13314403)
chr7 (216-260)||(4930164-4930208)
chr7 (210-260)||(44423257-44423308)
chr7 (210-260)||(10388497-10388547)
chr7 (210-260)||(21671108-21671158)
chr7 (214-260)||(42627318-42627364)
chr7 (210-257)||(9651090-9651138)
chr7 (210-260)||(30256779-30256829)
chr7 (217-260)||(9008086-9008130)
[»] chr1 (22 HSPs)
chr1 (210-260)||(25855096-25855146)
chr1 (210-260)||(47451345-47451395)
chr1 (210-260)||(51041581-51041631)
chr1 (211-260)||(25843738-25843787)
chr1 (211-260)||(33301300-33301349)
chr1 (211-260)||(47455506-47455555)
chr1 (216-260)||(3094045-3094089)
chr1 (210-258)||(16035527-16035575)
chr1 (210-260)||(16649732-16649782)
chr1 (210-260)||(16832026-16832076)
chr1 (210-260)||(23192937-23192987)
chr1 (211-260)||(19799133-19799182)
chr1 (210-260)||(26927842-26927892)
chr1 (210-260)||(46696595-46696645)
chr1 (211-260)||(39588487-39588536)
chr1 (213-260)||(18784668-18784716)
chr1 (210-252)||(12259910-12259952)
chr1 (210-260)||(40165905-40165955)
chr1 (211-260)||(10135382-10135431)
chr1 (211-255)||(8900162-8900206)
chr1 (212-260)||(28434705-28434753)
chr1 (216-260)||(38620624-38620668)
[»] scaffold0182 (1 HSPs)
scaffold0182 (211-260)||(10007-10056)
[»] scaffold0012 (1 HSPs)
scaffold0012 (211-257)||(166209-166256)
[»] scaffold2020 (1 HSPs)
scaffold2020 (211-257)||(283-329)
[»] scaffold0097 (1 HSPs)
scaffold0097 (211-260)||(15197-15247)
[»] scaffold0057 (1 HSPs)
scaffold0057 (210-260)||(35559-35609)
[»] scaffold0054 (1 HSPs)
scaffold0054 (210-260)||(25324-25374)
[»] scaffold0009 (1 HSPs)
scaffold0009 (211-257)||(165166-165212)
[»] scaffold0045 (1 HSPs)
scaffold0045 (210-257)||(82990-83038)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10265959 - 10265767
Alignment:
Q  16 atgagagaaatgacaagaggatcgaaatcccagacttgggtagtatgatggagagaataaaattttgttcatggggg-tggtttagttttaaaaagaaag 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  10265959 atgagagaaatgacaagaggatccaaatcccagacttgggtagtatgatggagagaataaaattttgttcatggggggtggtttagttgtaaaaagaaag 10265860  T
Q  115 gaataataactttttattttcaatttggcattgtaaccctatgcatctaaatgaagatccttcatctaaggagaaccctttgtacaaataaag 207  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  10265859 gaataataactttttattttctatttggcattgtaaccctgtgcatctaaaggaagatccttcatctaaggggaaccctttgtacaaataaag 10265767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 10284984 - 10284789
Alignment:
Q  16 atgagagaaatgacaagaggatcgaaatcccagacttgggtagtatgatggagagaataaaattttgttcatggggg-tggtttagttttaaaaagaaag 114  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  10284984 atgagagaaatgataagaggatccaaatcccagacttgggtagtatgatggagagaataaaattttgttcatggggggtggtttagttgtaaaaagaaag 10284885  T
Q  115 gaataataactttttattttcaatttggcattgtaaccctatgcatctaaatgaagatccttcatctaaggagaaccctttgtacaaataaagagt 210  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  10284884 gaataataactttttattttctatttggcattgtaaccctgtgcatctaaaggaagatccttcatctaaggggaaccctttgtacaaataaagagt 10284789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 32082260 - 32082210
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32082260 ttgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 32082210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 31273446 - 31273496
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  31273446 ttgttgtttttgaatttccaaactgttgtatttggatttccaaattctatt 31273496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 37260047 - 37259997
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  37260047 ttgttgtttttgaatttccaaactgttgtatttggatttccaaattctatt 37259997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 37264734 - 37264684
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  37264734 ttgttgtttttgaatttccaaactgttgtatttggatttccaaattctatt 37264684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 8693637 - 8693686
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  8693637 tgttgtttttggattttcaaactgttgtatttggatttccaaattctatt 8693686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 55810315 - 55810267
Alignment:
Q  212 gttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  55810315 gttgtttttggattttcaaactgttgtatttggatttccaaattctatt 55810267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 12824066 - 12824015
Alignment:
Q  209 gttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  12824066 gttgttgttttttgatttctaaactgttgtatttggatttccaaattctatt 12824015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 31268962 - 31269009
Alignment:
Q  213 ttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  31268962 ttgtttttgaatttccaaactgttgtatttggatttccaaattctatt 31269009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 31729541 - 31729491
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  31729541 ttgttgtttttggatttccaaactgctgtatttggatttccaagttctatt 31729491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 19101903 - 19101952
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  19101903 tgttgtttttggatttataaactgttgtatttggatttccaaattctatt 19101952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 33469146 - 33469093
Alignment:
Q  208 agttgttgttttt-ggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  33469146 agttgttgttttttggatttccaaactgttgtatttggattttcaaattctatt 33469093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 23093112 - 23093155
Alignment:
Q  217 ttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| |||||||||||||||| |||||||||||||||    
T  23093112 ttttggatttcaaaactgttgtatttggatttccaaattctatt 23093155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 8652179 - 8652129
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgta-tttggctttccaaattctat 259  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  8652179 ttgttgtttttggatttccaaactgttgtattttgattttccaaattctat 8652129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 8663986 - 8663936
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgta-tttggctttccaaattctat 259  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  8663986 ttgttgtttttggatttccaaactgttgtattttgattttccaaattctat 8663936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 12878152 - 12878202
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||| |||| ||||||| || ||||||||||||    
T  12878152 ttgttgtttttggatttccaaattgttatatttgggttcccaaattctatt 12878202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 19106544 - 19106594
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| |||| || ||||||||| |||||||||||||||    
T  19106544 ttgttgtttttggattttcaaattgctgtatttggatttccaaattctatt 19106594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 32221267 - 32221217
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| |||| |||||||||||| ||| |||||||||||    
T  32221267 ttgttgtttttggattttcaaattgttgtatttggattttcaaattctatt 32221217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 55251646 - 55251688
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaa 252  Q
    ||||||||||| ||||||||||||||||||||||| |||||||    
T  55251646 ttgttgtttttcgatttccaaactgttgtatttggatttccaa 55251688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 5928388 - 5928339
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||| |||||||||||||||||||||||  || |||||||||||    
T  5928388 tgttgtttttagatttccaaactgttgtatttggagtttcaaattctatt 5928339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 16420956 - 16420997
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaa 252  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  16420956 tgttgtttttggatttccaaactgttgtatttagatttccaa 16420997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 13522163 - 13522115
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgta-tttggctttccaaattct 257  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  13522163 ttgttgtttttggattttcaaactgttgtattttggttttccaaattct 13522115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 5271587 - 5271539
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||  ||||||  |||||||||||||||    
T  5271587 ttgttgtttttggatttccaaactgt--tatttgaatttccaaattctatt 5271539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 51697841 - 51697884
Alignment:
Q  213 ttgtttttggatttccaaactgttgtatttggctttccaaattc 256  Q
    |||||||||||||| |||||| |||||||||| |||||||||||    
T  51697841 ttgtttttggattttcaaactattgtatttggatttccaaattc 51697884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 8030645 - 8030596
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| |||| ||||||||||||||||  ||| |||||||||||    
T  8030645 tgttgtttttgaattttcaaactgttgtatttgaattttcaaattctatt 8030596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 40130856 - 40130806
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40130856 ttgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 40130806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 1911139 - 1911089
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  1911139 ttgttgtttttggatttccaaactgttgtatttggattttcaaattctatt 1911089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 18876536 - 18876486
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  18876536 ttgttgtttttggatttccaaactgctgtatttggatttccaaattctatt 18876486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 31450036 - 31449986
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  31450036 ttgttgtttttggatttccaaagtgttgtatttggatttccaaattctatt 31449986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 33416473 - 33416522
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  33416473 tgttgtttttggatttccaaactgttgtatttgaatttccaaattctatt 33416522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 4238479 - 4238435
Alignment:
Q  216 tttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  4238479 tttttggatttccaaactgttgtatttggatttccaaattctatt 4238435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 4243218 - 4243174
Alignment:
Q  216 tttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  4243218 tttttggatttccaaactgttgtatttggatttccaaattctatt 4243174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 19915073 - 19915122
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  19915073 tgttgtttttggatttacaaactgttgtatttgtatttccaaattctatt 19915122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 2965544 - 2965594
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||| |||||| ||||||||  |||||||||||||||    
T  2965544 ttgttgtttttggatttcgaaactgctgtatttgaatttccaaattctatt 2965594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 17025860 - 17025910
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||    
T  17025860 ttgttgtttttagattttcaaattgttgtatttggatttccaaattctatt 17025910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 17556352 - 17556402
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||||||    
T  17556352 ttgttgtttttagattttcaaattgttgtatttggatttccaaattctatt 17556402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 34118391 - 34118441
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||  ||||||| | |||||||||||||||    
T  34118391 ttgttgtttttggatttccaaactaatgtatttagatttccaaattctatt 34118441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 38182406 - 38182356
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| |||  ||||||||||||||||| |||||||||||||||    
T  38182406 ttgttgtttttgaattgtcaaactgttgtatttggatttccaaattctatt 38182356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 40126033 - 40126000
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttg 243  Q
    ||||||||||||||||||||||||||||||||||    
T  40126033 ttgttgtttttggatttccaaactgttgtatttg 40126000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 43302880 - 43302832
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctat 259  Q
    |||||||||||||||| ||||||||||||| ||| ||||||| ||||||    
T  43302880 tgttgtttttggattttcaaactgttgtatatggatttccaagttctat 43302832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 28559821 - 28559790
Alignment:
Q  213 ttgtttttggatttccaaactgttgtatttgg 244  Q
    ||||||||||||||||||||||||||||||||    
T  28559821 ttgtttttggatttccaaactgttgtatttgg 28559790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 15951660 - 15951626
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttgg 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  15951660 ttgttgtttttgtatttccaaactgttgtatttgg 15951626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 44926092 - 44926046
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattct 257  Q
    |||||||||| ||||||||||||| ||||||||| ||| ||||||||    
T  44926092 tgttgttttttgatttccaaactgctgtatttggattttcaaattct 44926046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 6408030 - 6407980
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6408030 ttgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 6407980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 8747706 - 8747757
Alignment:
Q  209 gttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  8747706 gttgttgtttttggatttacaaactgttgtatttggatttccaaattctatt 8747757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 17964696 - 17964650
Alignment:
Q  214 tgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  17964696 tgtttttggatttccaaactgttgtatttggatttccaaattctatt 17964650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 12688899 - 12688946
Alignment:
Q  213 ttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  12688899 ttgtttttggattttcaaactgttgtatttggatttccaaattctatt 12688946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 11534847 - 11534798
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  11534847 tgttgtttttggattttcaaactgttgtatttggatttcgaaattctatt 11534798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 11560357 - 11560308
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  11560357 tgttgtttttggattttcaaactgttgtatttggatttcgaaattctatt 11560308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 19674239 - 19674288
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  19674239 tgttgtttttggattttcaaactgttgtatttggattttcaaattctatt 19674288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 22609480 - 22609530
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||| |||||||||||| |||| |||||||||| |||||||||||||||    
T  22609480 ttgttggttttggatttccgaactattgtatttggatttccaaattctatt 22609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 33687772 - 33687739
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttgg 244  Q
    ||||||||||||||||||||||||||||||||||    
T  33687772 tgttgtttttggatttccaaactgttgtatttgg 33687739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 2760424 - 2760374
Alignment:
Q  211 tgttgtttttggatttccaaactgttgta-tttggctttccaaattctatt 260  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||| ||||    
T  2760424 tgttgtttttggatttccaaacagttgtattttggttttccaaattgtatt 2760374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 15991879 - 15991829
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||| ||||||| ||||||| |||||||||||  |||||||||||||||    
T  15991879 ttgttggttttggaattccaaattgttgtatttgaatttccaaattctatt 15991829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 15999541 - 15999491
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||| ||||||| ||||||| |||||||||||  |||||||||||||||    
T  15999541 ttgttggttttggaattccaaattgttgtatttgaatttccaaattctatt 15999491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 25316740 - 25316694
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattc 256  Q
    |||||||||||| ||||||||||| || ||||||| |||||||||||    
T  25316740 ttgttgtttttgaatttccaaactattatatttggatttccaaattc 25316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 26204234 - 26204188
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattc 256  Q
    |||||||||||| ||||||||||| || ||||||| |||||||||||    
T  26204234 ttgttgtttttgaatttccaaactattatatttggatttccaaattc 26204188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 12406531 - 12406499
Alignment:
Q  212 gttgtttttggatttccaaactgttgtatttgg 244  Q
    ||||||||||||||| |||||||||||||||||    
T  12406531 gttgtttttggattttcaaactgttgtatttgg 12406499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 20748464 - 20748416
Alignment:
Q  213 ttgtttttggatttccaaactgttgta-tttggctttccaaattctatt 260  Q
    ||||||||||||||| ||| ||||||| ||||| |||||||||||||||    
T  20748464 ttgtttttggatttctaaattgttgtattttggttttccaaattctatt 20748416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 21308959 - 21309006
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| |||||   ||||||||| |||||||||||||||    
T  21308959 ttgttgtttttggattttcaaac---tgtatttggatttccaaattctatt 21309006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 39518335 - 39518385
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39518335 ttgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 39518385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 556620 - 556670
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  556620 ttgttgtttttggatttccaaacagttgtatttggatttccaaattctatt 556670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 561392 - 561442
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  561392 ttgttgtttttggatttccaaacagttgtatttggatttccaaattctatt 561442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 41996590 - 41996640
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  41996590 ttgttgtttttggatttccaaacagttgtatttggatttccaaattctatt 41996640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 42001359 - 42001409
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  42001359 ttgttgtttttggatttccaaacagttgtatttggatttccaaattctatt 42001409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 10759992 - 10759947
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattc 256  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  10759992 tgttgtttttggatttccaaactgttgtatttggatttccaaattc 10759947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 29168142 - 29168093
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  29168142 tgttgtttttggatttccaaactgttgtatttgaatttccaaattctatt 29168093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 37248964 - 37248915
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  37248964 tgttgtttttggatttccaaactgttatatttggatttccaaattctatt 37248915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 37652999 - 37652950
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  37652999 tgttgtttttggatttccaaattgttgtatttggatttccaaattctatt 37652950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 36428640 - 36428684
Alignment:
Q  216 tttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  36428640 tttttggatttccaaactgttgtatttggatttccaaattctatt 36428684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 39522973 - 39523024
Alignment:
Q  210 ttgttgtttttggatttccaaactgtt-gtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  39522973 ttgttgtttttggatttccaaactgttagtatttggatttccaaattctatt 39523024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 6155589 - 6155539
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  6155589 ttgttgattttggttttccaaactgttgtatttggatttccaaattctatt 6155539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 12045309 - 12045259
Alignment:
Q  211 tgttgtttttggatttccaaactgttgta-tttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  12045309 tgttgtttttggatttccaaactgttgtattttggttttccaaattctatt 12045259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 12102950 - 12103000
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggcttt-ccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  12102950 tgttgtttttggatttccaaactgttgtatttggatttcccaaattctatt 12103000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 37550170 - 37550121
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||| |||| |||||||||||| |||||||||||||||    
T  37550170 tgttgtttttggattttcaaattgttgtatttggatttccaaattctatt 37550121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 12502071 - 12502019
Alignment:
Q  209 gttgttgtttttggatttccaaactgtt-gtatttggctttccaaattctatt 260  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  12502071 gttgttgtttttggattttcaaactgttcgtatttggatttccaaattctatt 12502019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 36423565 - 36423612
Alignment:
Q  213 ttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  36423565 ttgtttttggattttcaaactgttgtatttggatttccaaaatctatt 36423612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 3665857 - 3665907
Alignment:
Q  211 tgttgtttttggatttccaaactgttgta-tttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  3665857 tgttgtttttggatttccaaactgttgtattttggtttttcaaattctatt 3665907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 35680048 - 35680002
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattc 256  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||||    
T  35680048 ttgttgtttttggattttcaaattgttgtatttggatttccaaattc 35680002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 7451684 - 7451733
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||| ||||||||||||||||  ||| |||||||||||    
T  7451684 tgttgtttttggattttcaaactgttgtatttgaattttcaaattctatt 7451733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 26667198 - 26667247
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||| |||||||||||| ||||||||||  ||||||||||||||    
T  26667198 tgttgtttttagatttccaaactattgtatttggagttccaaattctatt 26667247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 26938795 - 26938844
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||| |||||||||||| ||||||||||  ||||||||||||||    
T  26938795 tgttgtttttagatttccaaactattgtatttggagttccaaattctatt 26938844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 41587329 - 41587280
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  41587329 tgttgtttttggatttctaaactgttgtatttgaattttcaaattctatt 41587280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 11981443 - 11981399
Alignment:
Q  216 tttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| |||||||||||| |||| |||||||||||||||    
T  11981443 tttttggattttcaaactgttgtagttggatttccaaattctatt 11981399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 6514770 - 6514721
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| ||||  |||||||||||||||| |||||||||||||||    
T  6514770 ttgttgtttttg-attttaaaactgttgtatttggatttccaaattctatt 6514721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 40147828 - 40147870
Alignment:
Q  218 tttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||| ||||||||||| |||||||||| |||||||||||||||    
T  40147828 tttgaatttccaaactattgtatttggatttccaaattctatt 40147870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 12104249 - 12104205
Alignment:
Q  213 ttgtttttggatttccaaactgttgtatttggctttccaaattct 257  Q
    ||||||||| |||||||||| ||||||||||| ||| ||||||||    
T  12104249 ttgtttttgtatttccaaacagttgtatttggattttcaaattct 12104205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 3672509 - 3672559
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3672509 ttgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 3672559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 3692541 - 3692591
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3692541 ttgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 3692591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 7571388 - 7571338
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7571388 ttgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 7571338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 29350164 - 29350213
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29350164 tgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 29350213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 39775897 - 39775848
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39775897 tgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 39775848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 23661620 - 23661570
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  23661620 ttgttgtttttgaatttccaaactgttgtatttggatttccaaattctatt 23661570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 23666293 - 23666243
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  23666293 ttgttgtttttgaatttccaaactgttgtatttggatttccaaattctatt 23666243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 24038541 - 24038491
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  24038541 ttgttgtttttgaatttccaaactgttgtatttggatttccaaattctatt 24038491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 8069603 - 8069652
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  8069603 tgttgtttttggatttccaaacagttgtatttggatttccaaattctatt 8069652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 758532 - 758488
Alignment:
Q  216 tttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  758532 tttttggatttccaaactgttgtatttggatttccaaattctatt 758488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 3418917 - 3418968
Alignment:
Q  210 ttgttgtttttgg-atttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  3418917 ttgttgtttttggtatttccaaactgttgtatttggatttccaaattctatt 3418968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 29715570 - 29715617
Alignment:
Q  213 ttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||    
T  29715570 ttgtttttggatttccaaactgttgtatttagatttccaaattctatt 29715617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 8883093 - 8883143
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  8883093 ttgttgattttggatttccaaactgttgtatttggattttcaaattctatt 8883143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 8887853 - 8887903
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||| |||||||||||||||||||||||||||  |||||||||||||||    
T  8887853 ttgttgattttggatttccaaactgttgtatttgaatttccaaattctatt 8887903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 16013643 - 16013693
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  16013643 ttgttggttttggatttccaaactgttgtatttggatttccaaagtctatt 16013693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 55431242 - 55431288
Alignment:
Q  214 tgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  55431242 tgtttttggatttccaaacagttgtatttggatttccaaattctatt 55431288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 14438864 - 14438815
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  14438864 tgttgtttttggattcccaaactgttgtatttggatttccaagttctatt 14438815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 27708803 - 27708851
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  27708803 tgttgtttttg-atttccaaactgttgtatttggatttccaaattctatt 27708851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 3033573 - 3033617
Alignment:
Q  216 tttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  3033573 tttttggatttccaaactgtagtatttggatttccaaattctatt 3033617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 49971591 - 49971552
Alignment:
Q  213 ttgtttttggatttccaaactgttgtatttggctttccaa 252  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  49971591 ttgtttttggatttccaaactgttgtatttggatttccaa 49971552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 18471931 - 18471981
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| ||||| |||||| ||||||||| |||||||||||||||    
T  18471931 ttgttgtttttgaatttctaaactgatgtatttggatttccaaattctatt 18471981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 20519977 - 20520027
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||| | |||| ||||||||||||||||| |||||||||||||||    
T  20519977 ttgttgttttcgaattttcaaactgttgtatttggatttccaaattctatt 20520027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 18467149 - 18467198
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| |||||||||||| ||||||||| ||| |||||||||||    
T  18467149 tgttgtttttgaatttccaaactgatgtatttggattttcaaattctatt 18467198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 12112823 - 12112773
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||    
T  12112823 ttgttgttttttgatttacaaaccgttgtatttggattttcaaattctatt 12112773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 12966040 - 12965994
Alignment:
Q  213 ttgtttttggatttccaaactgttgtatttggctttccaaattctat 259  Q
    ||||||||| |||| ||||| ||||||||||| ||||||||||||||    
T  12966040 ttgtttttgaattttcaaaccgttgtatttgggtttccaaattctat 12965994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 3657409 - 3657360
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||| ||||||||| ||||||||||||||||  |||| ||||||||||    
T  3657409 tgttgtgtttggattttcaaactgttgtatttgaatttctaaattctatt 3657360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 30650854 - 30650904
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30650854 ttgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 30650904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 9189972 - 9189923
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9189972 tgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 9189923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 19892635 - 19892586
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19892635 tgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 19892586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 18344357 - 18344406
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  18344357 tgttgtttttggatttccaaactgttgtatttggattttcaaattctatt 18344406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 30631505 - 30631554
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  30631505 tgttgtttttggatttccaaactgttgtatttggatttccaagttctatt 30631554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 28603230 - 28603273
Alignment:
Q  217 ttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  28603230 ttttggatttccaaactgttgtatttggatttccaaattctatt 28603273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 9180894 - 9180844
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  9180894 ttgttgtttttgaatttccaaactgttgtatttggattttcaaattctatt 9180844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 10160894 - 10160844
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  10160894 ttgttgtttttggatttccaaactcttgtatttggatttctaaattctatt 10160844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 30658188 - 30658238
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  30658188 ttgttgtttttggatttccaaactgttgtatttgcatttccaagttctatt 30658238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 1935162 - 1935113
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  1935162 tgttgtttttgaattttcaaactgttgtatttggatttccaaattctatt 1935113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 29677694 - 29677742
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  29677694 tgttgtttttggatttc-aaactgttgtatttggatttccaaattctatt 29677742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 35601848 - 35601897
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  35601848 tgttgtttttggatttccaaactattgtatttggattttcaaattctatt 35601897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 35639166 - 35639117
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  35639166 tgttgtttttggatttccaaactattgtatttggattttcaaattctatt 35639117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 20711358 - 20711408
Alignment:
Q  211 tgttgtttttggatttccaaactgttgta-tttggctttccaaattctatt 260  Q
    |||||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  20711358 tgttgtttttggatttacaaactgttgtattttggttttccaaattctatt 20711408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 25478471 - 25478425
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattc 256  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||||    
T  25478471 ttgttgtttttggattttcaaactattgtatttggatttccaaattc 25478425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 42926930 - 42926881
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||||||||    
T  42926930 ttgttgtttttggattttcaaactgtt-tatttggatttccaaattctatt 42926881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 12796851 - 12796900
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||| |||||||||||||  ||| |||||||||||    
T  12796851 tgttgtttttggatttccacactgttgtatttgaattttcaaattctatt 12796900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 31326665 - 31326714
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||| ||||||| |||  |||||||||||||||    
T  31326665 tgttgtttttggatttccaaaatgttgtaattgaatttccaaattctatt 31326714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 40847780 - 40847735
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaatt 255  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  40847780 ttgttgtttttagattttcaaactgttgtatttggatttccaaatt 40847735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 19578595 - 19578548
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattcta 258  Q
    ||||| ||||||||||||||||| |||||||||| ||| |||||||||    
T  19578595 tgttggttttggatttccaaactattgtatttggattttcaaattcta 19578548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 25497498 - 25497456
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaa 253  Q
    ||||||||||||||||||||||| |||||||| | ||||||||    
T  25497498 tgttgtttttggatttccaaactattgtatttagatttccaaa 25497456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 7738020 - 7737971
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||| ||||||||||| | |||||||||||||| ||| |||||||||||    
T  7738020 tgttgattttggatttctatactgttgtatttggattttcaaattctatt 7737971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 7030 - 7079
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7030 tgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 7079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 4000 - 4049
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4000 tgttgtttttggatttccaaactgttgtatttggatttccaaattctatt 4049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 8268218 - 8268268
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  8268218 ttgttgtttttggatttccaaactgttgtatttgcatttccaaattctatt 8268268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 26287339 - 26287290
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  26287339 tgttgtttttggatttcaaaactgttgtatttggatttccaaattctatt 26287290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 8075975 - 8076025
Alignment:
Q  211 tgttgtttttggatttccaaactgttgta-tttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  8075975 tgttgtttttggatttccaaactgttgtattttggttttccaaattctatt 8076025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 13314403 - 13314358
Alignment:
Q  213 ttgtttttggatttccaaactgttgtatttggctttccaaattcta 258  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||    
T  13314403 ttgtttttgggtttccaaactgttgtatttggatttccaaattcta 13314358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 4930164 - 4930208
Alignment:
Q  216 tttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||| |||||||||||||||||||||| |||||||||||||||    
T  4930164 tttttgaatttccaaactgttgtatttggatttccaaattctatt 4930208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 44423308 - 44423257
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggcttt-ccaaattctatt 260  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  44423308 ttgttgtttttggattttcaaactgttgtatttggatttcccaaattctatt 44423257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 10388547 - 10388497
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| ||||| ||| ||||||||||||| |||||||||||||||    
T  10388547 ttgttgtttttagattttcaagctgttgtatttggatttccaaattctatt 10388497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 21671108 - 21671158
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||  || ||||||| |||||||||||||||    
T  21671108 ttgttgtttttggatttccaaacaattttatttggatttccaaattctatt 21671158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 42627364 - 42627318
Alignment:
Q  214 tgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||    
T  42627364 tgtttttgaatttccaaactgttgtatttgaatttccaaattctatt 42627318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 9651138 - 9651090
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgta-tttggctttccaaattct 257  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  9651138 ttgttgtttttggattttcaaactgttgtattttggttttccaaattct 9651090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 30256779 - 30256829
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||  ||||| |||||||||| ||| |||||||||||    
T  30256779 ttgttgtttttggatttataaactattgtatttggatttgcaaattctatt 30256829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 9008086 - 9008130
Alignment:
Q  217 ttttggatttccaaactgttgta-tttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||    
T  9008086 ttttggatttccaaactgttgtattttggttttctaaattctatt 9008130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 25855096 - 25855146
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  25855096 ttgttgtttttgaatttccaaactgttgtatttggatttccaaattctatt 25855146  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 47451395 - 47451345
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  47451395 ttgttgtttttggatttccaaacagttgtatttggatttccaaattctatt 47451345  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 51041631 - 51041581
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  51041631 ttgttgtttttggatttccaaactgatgtatttggatttccaaattctatt 51041581  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 25843738 - 25843787
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  25843738 tgttgtttttgaatttccaaactgttgtatttggatttccaaattctatt 25843787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 33301349 - 33301300
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  33301349 tgttgtttttggatttccaatctgttgtatttggatttccaaattctatt 33301300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 47455555 - 47455506
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  47455555 tgttgtttttggatttccaaacagttgtatttggatttccaaattctatt 47455506  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 3094045 - 3094089
Alignment:
Q  216 tttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  3094045 tttttggatttccaaactgttgtatttggatttccaaattctatt 3094089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 16035527 - 16035575
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattcta 258  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  16035527 ttgttgtttttggatttccaaactgttgtatttggattttcaaattcta 16035575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 16649782 - 16649732
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  16649782 ttgttgtttttggattttcaaactgttgtatttgaatttccaaattctatt 16649732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 16832026 - 16832076
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  16832026 ttgttgtatttggatttccaaaccgttgtatttggatttccaaattctatt 16832076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 23192987 - 23192937
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  23192987 ttgttgtttttggattttcaaactgttgtgtttggttttccaaattctatt 23192937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 19799182 - 19799133
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  19799182 tgttgtttttggattttcaaactgttgtatttggattttcaaattctatt 19799133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 26927892 - 26927842
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| ||||||||||||||||| |||  ||||||||||    
T  26927892 ttgttgtttttggattttcaaactgttgtatttggatttttaaattctatt 26927842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 46696595 - 46696645
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||||| ||||||||| ||||| | |||||||||||||||    
T  46696595 ttgttgtttttggattttcaaactgttttatttagatttccaaattctatt 46696645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 39588536 - 39588487
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||  ||||||||||| |||||||||| ||||    
T  39588536 tgttgtttttggatttccaaatagttgtatttggatttccaaattatatt 39588487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 18784716 - 18784668
Alignment:
Q  213 ttgtttttggatttccaaactgttgtat-ttggctttccaaattctatt 260  Q
    |||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  18784716 ttgtttttggatttccaaactgttgtatgttggttttctaaattctatt 18784668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 12259910 - 12259952
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaa 252  Q
    |||||||||||||||||||| |||||| ||||||| |||||||    
T  12259910 ttgttgtttttggatttccacactgttatatttggatttccaa 12259952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 40165905 - 40165955
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| ||||| ||||||||||||||||| || ||| ||||||||    
T  40165905 ttgttgtttttagattttcaaactgttgtatttggattaccatattctatt 40165955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 10135382 - 10135431
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||| |||||||||||  ||||||||| ||||||| |||||||    
T  10135382 tgttgtttttgtatttccaaactcctgtatttggatttccaagttctatt 10135431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 8900162 - 8900206
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaatt 255  Q
    |||||||||||||||| |||||||||| |||||  ||||||||||    
T  8900162 tgttgtttttggattttcaaactgttgcatttgaatttccaaatt 8900206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 28434753 - 28434705
Alignment:
Q  212 gttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||||||||||| |||||| |||||||||  ||| |||||||||||    
T  28434753 gttgtttttggattttcaaactattgtatttgaattttcaaattctatt 28434705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 38620624 - 38620668
Alignment:
Q  216 tttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||| |||| ||||||||||||||||| |||||||||| ||||    
T  38620624 tttttgaattttcaaactgttgtatttggatttccaaattttatt 38620668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 10056 - 10007
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  10056 tgttgtttttggatttccaaacagttgtatttggatttccaaattctatt 10007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 166256 - 166209
Alignment:
Q  211 tgttgtttttggatttccaaactgttgta-tttggctttccaaattct 257  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  166256 tgttgtttttggatttccaaactgttgtattttggttttccaaattct 166209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2020 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold2020
Description:

Target: scaffold2020; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 283 - 329
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattct 257  Q
    |||||||||||||||||||||||||||||||| | |||| |||||||    
T  283 tgttgtttttggatttccaaactgttgtatttagatttcgaaattct 329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 15197 - 15247
Alignment:
Q  211 tgttgtttttggatttccaaactgttgta-tttggctttccaaattctatt 260  Q
    |||||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  15197 tgttgtttttggatttacaaactgttgtattttggttttccaaattctatt 15247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 35559 - 35609
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||| |||||| |||| ||||||||||||||||| |||||||||||||||    
T  35559 ttgttatttttgcattttcaaactgttgtatttggatttccaaattctatt 35609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 25324 - 25374
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgtatttggctttccaaattctatt 260  Q
    ||||||| ||||||||| ||||||| ||||||||| |||||||||||||||    
T  25324 ttgttgtctttggattttcaaactgctgtatttggatttccaaattctatt 25374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 165212 - 165166
Alignment:
Q  211 tgttgtttttggatttccaaactgttgtatttggctttccaaattct 257  Q
    |||||||||||||||||||||||||||||||| | |||| |||||||    
T  165212 tgttgtttttggatttccaaactgttgtatttagatttcgaaattct 165166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 82990 - 83038
Alignment:
Q  210 ttgttgtttttggatttccaaactgttgta-tttggctttccaaattct 257  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  82990 ttgttgtttttggatttctaaactgttgtattttggttttccaaattct 83038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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