View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_high_26 (Length: 248)
Name: NF18176_high_26
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 12051506 - 12051719
Alignment:
| Q |
19 |
gttagcactctctctcattataattattatgtaatagattatgtataataatgtaatataacttgccaaaaaatcaattattcgtgtagtccatcattac |
118 |
Q |
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| T |
12051506 |
gttagcactctctctcaatataattattatgtaatagattatgtataataatgtaatataacttgccaaaaaatcaattattcgtgtagtccatcattac |
12051605 |
T |
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| Q |
119 |
tacttatgtcttcatcttgttcttggttggttattctgcattcactagcttcattagattttcttcttagagatggaatctatgatcaagacatggttgg |
218 |
Q |
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| T |
12051606 |
tacttatgtcttcatcttgttcttggttggttattctggattcaccagcttcattagattttcttcttagagacggaatctatgatcaagacatggttgg |
12051705 |
T |
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| Q |
219 |
tgatgcttattctt |
232 |
Q |
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|||||||||||||| |
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| T |
12051706 |
tgatgcttattctt |
12051719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 12064378 - 12064603
Alignment:
| Q |
19 |
gttagcactctctctcattataattattatgtaatagattatgt-----ataataatgtaatataacttgccaaaaaatcaattattcgtgtagtccatc |
113 |
Q |
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| T |
12064378 |
gttagcactctatctcaggataattattatgaaaaagattatattatagataataatgtaatgtaacttgccaaaaaaccaattatttgtatggtccatc |
12064477 |
T |
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| Q |
114 |
attactacttatg-------tcttcatcttgttcttggttggttattctgcattcactagcttcattagattttcttcttagagatggaatctatgatca |
206 |
Q |
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| T |
12064478 |
attaatacttatgagttatgtcttcgtcttgttcttggttggttattctggattcactagcttcattatattttcttcttagagacggaatctatgatca |
12064577 |
T |
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| Q |
207 |
agacatggttggtgatgcttattctt |
232 |
Q |
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| T |
12064578 |
agacatggttggtgatgcttattctt |
12064603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 63 - 232
Target Start/End: Original strand, 12058975 - 12059151
Alignment:
| Q |
63 |
ataataatgtaatataacttgccaaaaaatcaattattcgtgtagtccatcattactact-------tatgtcttcatcttgttcttggttggttattct |
155 |
Q |
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| T |
12058975 |
ataataatgtaatgtaacttaccaaaaaaccaattattcgtgtggtccatcattaatactcatgagttatgtcttcatcttgttcttggttggttattct |
12059074 |
T |
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| Q |
156 |
gcattcactagcttcattagattttcttcttagagatggaatctatgatcaagacatggttggtgatgcttattctt |
232 |
Q |
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| T |
12059075 |
ggattcactagtttcattatattttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattctt |
12059151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 5582983 - 5582912
Alignment:
| Q |
164 |
tagcttcattagattttcttcttagagatggaatctatgatcaagacatggttggtgatgcttattcttctc |
235 |
Q |
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| T |
5582983 |
tagcttcattagattttcttcttagagatggattctataataaagacatggttggtgtttcctattcttctc |
5582912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 5573708 - 5573643
Alignment:
| Q |
164 |
tagcttcattagattttcttcttagagatggaatctatgatcaagacatggttggtgatgcttatt |
229 |
Q |
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| T |
5573708 |
tagcttcattagactttcttcttagagatggaatctataatcaaaacatggttggtggttcttatt |
5573643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 5593463 - 5593404
Alignment:
| Q |
176 |
attttcttcttagagatggaatctatgatcaagacatggttggtgatgcttattcttctc |
235 |
Q |
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| T |
5593463 |
attttcttcttagagatggaatctatgataaagccatggttggtgtttcctattcttctc |
5593404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 12047418 - 12047453
Alignment:
| Q |
197 |
tctatgatcaagacatggttggtgatgcttattctt |
232 |
Q |
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| T |
12047418 |
tctatgatcaagacatggttggtgatgcctattctt |
12047453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 12047371 - 12047420
Alignment:
| Q |
136 |
tgttcttggttggttattctgcattcactagcttcattagattttcttct |
185 |
Q |
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| T |
12047371 |
tgttcttggtgggtatttctggattcactagcttctttagattttcttct |
12047420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 5587240 - 5587184
Alignment:
| Q |
163 |
ctagcttcattagattttcttcttagagatggaatctatgatcaagacatggttggt |
219 |
Q |
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| T |
5587240 |
ctagcttcattagattgtctgcttaaatatggaatttataatcaagaaatggttggt |
5587184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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