View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_high_28 (Length: 240)
Name: NF18176_high_28
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36998869 - 36999090
Alignment:
| Q |
1 |
ccgccgcattgtgttcacgtgctgccagcttatctagctctgcctggttcatctttgcctctttcttatgggttgccatctctttttgcacaggatcacg |
100 |
Q |
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| T |
36998869 |
ccgccgcattgtgttcacgtgctgccagcttatctagctctgcctggttcatctttgcctctttcttatgggttgccatctctttttgcacaggatcacg |
36998968 |
T |
|
| Q |
101 |
tgttgttatcttctcagtctggagataaattagttcaacacatgttaggagcaaacaacacaaatgtgacccataactagcacattgaaagaagaaaaaa |
200 |
Q |
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| T |
36998969 |
tgctgtcatcttctcagtctggagataaattagttcaacacatgttaggaacaaacaacacaaatgtgacccataactagcacattgaaagaagaaaaaa |
36999068 |
T |
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| Q |
201 |
gagttcttcaaaagtatactat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36999069 |
gagttcttcaaaagtatactat |
36999090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 36994070 - 36994182
Alignment:
| Q |
9 |
ttgtgttcacgtgctgccagcttatctagctctgcctggttcatctttgcctctttcttatgggttgccatctctttttgcacaggatcacgtgttgtta |
108 |
Q |
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||||||||||| || ||| ||||| ||||| |||||||| | | || | |||||||| |||||||||||||||||||||| ||||||| ||| || | |
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| T |
36994070 |
ttgtgttcacgcgccgcctctttatcaagctcagcctggttaaccctttcttctttcttttgggttgccatctctttttgcaaaggatcatgtgccgtca |
36994169 |
T |
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| Q |
109 |
tcttctcagtctg |
121 |
Q |
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||||||| ||||| |
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| T |
36994170 |
tcttctctgtctg |
36994182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 36988346 - 36988407
Alignment:
| Q |
60 |
tctttcttatgggttgccatctctttttgcacaggatcacgtgttgttatcttctcagtctg |
121 |
Q |
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|||||||| |||||||||||||| ||||||| ||||||| ||| || |||||||| ||||| |
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| T |
36988346 |
tctttcttttgggttgccatctccttttgcaaaggatcatgtgccgtcatcttctctgtctg |
36988407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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