View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_high_3 (Length: 524)
Name: NF18176_high_3
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 87 - 507
Target Start/End: Original strand, 40039374 - 40039787
Alignment:
| Q |
87 |
gtaattcaaaagtgcgtcgaatcaaaagagggagaagagaaaaagttttctattaacaaaataaaactcttggtgtatagaaaagggaggataaaagacc |
186 |
Q |
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| T |
40039374 |
gtaattcaaaagtgcgtcgaatcaaaagagggagaagagagaaagttttctat-aacagaataaaactcttggtgtatagaaaagggaggatgaaagacc |
40039472 |
T |
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| Q |
187 |
acttatatgatgttgaaaactaataaggtgtgtaaactaaaagatacgagacattaaannnnnnnctacttcaaattacactcataatacactctgctat |
286 |
Q |
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| T |
40039473 |
acttatatgatgttgaaaagtaataaggtgtgtaaactaaaagatacgagacattaa-cttttttctacttcaaattacactcataatacactctgctat |
40039571 |
T |
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| Q |
287 |
ccataataggactctagagtttttatttacaattcagaggtctatgttacnnnnnnnnnnncacaattaaaagtttggatgatgaataccctttctgata |
386 |
Q |
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| T |
40039572 |
ccttaataggactctagagtttttatttacaattcagaggtctatgttacaaaataaa---cacaattaaaagtttggataatgagtaccctttctgat- |
40039667 |
T |
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| Q |
387 |
tgatgtagtcttatatttttcccttagcggatatattttcttccaaaccacttaaatatacgaacttcgctgtcttcacaaactttccaccaataaccga |
486 |
Q |
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| T |
40039668 |
-gatgtagtcttatatttttcccttagcggatatattttcttccaaaccacttatatatacgaacttcgctgtcttcacaaactttccaccaataaccga |
40039766 |
T |
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| Q |
487 |
ccatatatggtgataagaact |
507 |
Q |
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| T |
40039767 |
ccatatatggtgataagaact |
40039787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 40039267 - 40039349
Alignment:
| Q |
3 |
acaacgtttctttggagagattaaattttttaaaaaggacagttattttgaagagactaaattacctataagggaaaaattat |
85 |
Q |
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| T |
40039267 |
acaacatttctttggagagactaaattttttaaaaaggacagttattttgaagagactaaatttcttataagggaaaaattat |
40039349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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