View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18176_high_35 (Length: 208)
Name: NF18176_high_35
Description: NF18176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18176_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 8e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 10766171 - 10766349
Alignment:
| Q |
17 |
aataagcttgaaattggtagctgtgagaatcaaaagaggtggacttataagggttctcaaatctttttgaaagagagtcaaaagtgcttaactgcttccg |
116 |
Q |
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| T |
10766171 |
aataagcttgaaattggtagctgtgagaatcaaaagaggtggacttataagggttctcaaatctttttgaaagagagtcaaaagtgcttaactgcttccg |
10766270 |
T |
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| Q |
117 |
gtgaagggcttccagtttccgtttctgatgattgcgaaagcaagaatagttcatggaaaactgcatcaccttctaaact |
195 |
Q |
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| T |
10766271 |
gtgaagggcttccagtttccgtttctgatgattgcgaaagcaagaatagttcatggaaaactgcatcaccttctaaact |
10766349 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 2105317 - 2105380
Alignment:
| Q |
23 |
cttgaaattggtagctgtgagaatcaaaagaggtggacttataagggttctcaaatctttttga |
86 |
Q |
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| T |
2105317 |
cttgaatttggtaactttgagaatcaaaagagatggatttatgatggttctcaaatccttttga |
2105380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 38326324 - 38326492
Alignment:
| Q |
23 |
cttgaaattggtagctgtgagaatcaaaagaggtggacttataagggttctcaaatctttttgaaagagagtcaaaagtgcttaactgcttccggtgaag |
122 |
Q |
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| T |
38326324 |
cttgaaatcggtagctgcgagaatcaaacaagatggatttataatggttctcaaatccttttgaatgattccaagaagtgcttaactgctattggtgaag |
38326423 |
T |
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| Q |
123 |
ggcttccagtttccgtttctgatgattgcgaaagcaagaatagttcatggaaaactgcatcaccttcta |
191 |
Q |
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| T |
38326424 |
ggcttccagtagctatttctgatgattacgaaaacaagaacagttcatggaaatctgaatcactttcta |
38326492 |
T |
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